PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678325893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36504.6 Da PI: 7.1595 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.5e-52 | 22 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 lppGfrFhPtd e++v+yL kk++++ ++ +i e+d++k+ePwdL++k k +e+ew+fF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k+++ 678325893 22 LPPGFRFHPTDTEIIVDYLLKKAADRGFTS-VAIGEADLNKCEPWDLHSKSKLGEREWFFFFQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKDADf 120 79*************************988.67**************9888999***************************************9644336 PP NAM 100 .vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrapkgek+ Wvmheyrl 678325893 121 lVGMKKTLVFYKGRAPKGEKSVWVMHEYRL 150 6***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-58 | 19 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.66 | 22 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MYAAGRSVSG GEQEDDFDVA QLPPGFRFHP TDTEIIVDYL LKKAADRGFT SVAIGEADLN 60 KCEPWDLHSK SKLGEREWFF FFQRDRKYPT GMRTNRATES GYWKATGKDK EIYKGKDADF 120 LVGMKKTLVF YKGRAPKGEK SVWVMHEYRL VADLSSCNLP RNVTMGEWVV CRVFHKNKAY 180 RRNPEIDLPQ PSSSTNPHIE GSPLPQSRNY SEDDDHKGNF IHPQRNHLPS PTSSLSISYD 240 PHPNNIFYSQ SNPYHQHIPL RPSHPMDSNR EYPRSENNPA IRPSAEGREN GGKEGLDLQL 300 NDINLGPIDI SELNSFWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 10 | 182 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 10 | 182 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 10 | 182 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 10 | 182 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 10 | 182 | 8 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 10 | 182 | 5 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 10 | 182 | 5 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678325893 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078584.1 | 9e-88 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FK44 | 1e-77 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A1U8BIE1 | 5e-81 | A0A1U8BIE1_NELNU; NAC domain-containing protein 72-like | ||||
STRING | XP_010276452.1 | 9e-82 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 3e-81 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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