PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678323674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 576aa MW: 63307.4 Da PI: 7.4703 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.4e-13 | 431 | 477 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq 678323674 431 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 477 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.5E-54 | 46 | 236 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-18 | 430 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-14 | 430 | 481 | No hit | No description |
Pfam | PF00010 | 3.2E-10 | 431 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-17 | 431 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-16 | 433 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 576 aa Download sequence Send to blast |
MGFVGWNNED SAVAAAVLGS NAFNYLMSSS ISAECSLIAV ENDESLQNKL SDLVEHTNYS 60 KCNWNYAIFW QLSRSRSGDL VLAWGDGCCR EPRADEEAEG HQRFDAKFRM GDESQQRMRK 120 RVIQMLHKTF GGSDDDCYAF GLDRVTDTEM FFLASMYFSF PTGQGGPGKC FVSGKHIWLS 180 NALSMSVDYC FRSSLAKSAG IQTIVLIPTD IGVVELGSVR SIPENLGILK LVGSKFSSFS 240 CPLSKQVVAE AVKSDKQDSV GGVTGLAIAS RDRCNFKTFG QGSLSNGLAI GGREQCNPKI 300 FGQDNSSNVQ FKEKRSMRQT ASHHNGFHEA PCTAYSNLKL GSDEICRHPM VVAGVSEVGM 360 GCNAEFWLNG TQQGKPLQMK IDFSGSSSKG IDSEHSDHEA CCKRETSEPS EERRPRKRGR 420 KPANGRDEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKRV 480 SDLEGERGGE PMEANHDALA KSIDIQVDGD KLTLRHTCPM ETHPASSLIR AITKANGRIL 540 EAKMAAGAGA MYHTFVVKSQ GSERLTKEKL IESMSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 1e-27 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 412 | 420 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678323674 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093944.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A2Z4K512 | 0.0 | A0A2Z4K512_TECGR; BHLH1 protein | ||||
STRING | PGSC0003DMT400000652 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-145 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|