PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678321272
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 320aa    MW: 35466.7 Da    PI: 5.5029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678321272genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05108129223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C+dCg+ Fs+   L  H++ H
  678321272 108 SCEDCGMEFSSLRALCGHMSAH 129
                7******************988 PP
2zf-C2H215.83.9e-05139160223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C+ Cgk+F++      H++tH
  678321272 139 ECKECGKVFNTVKAVYGHMKTH 160
                6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.6E-4934IPR007087Zinc finger, C2H2
SMARTSM003550.0971032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055107134IPR007087Zinc finger, C2H2
SMARTSM003550.043107129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.09E-8108160No hitNo description
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
PfamPF139120.042109130IPR007087Zinc finger, C2H2
SMARTSM003550.037138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697138165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-4139162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-6139162IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGDFEGVKRH KCKFCDKICV SGRALGGHMR AHMALLASSK EAEKEKETIR SGCFEGGDDQ  60
ECGDSDCSVD CEDMDQRSSY ELRENPKKSW RASIESKKDG VQVQNALSCE DCGMEFSSLR  120
ALCGHMSAHS IKKRKIASEC KECGKVFNTV KAVYGHMKTH SKKRKATANS SDKETLAGFR  180
RKRSRIQYKS TNFATFSELE AEAAEGLLML SMAEIHPSVS DDDSAYFQGD SFPTIEEAAN  240
NDSTEDLDAV TEKEGVSDVL EQSLGRDSSE NDTDYETEAL RILQKELQCV EGDKTLHPCI  300
KMRRLTAVTV DSKSAISMLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162182KRKATANSSDKETLAGFRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678321272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554652.15e-53uncharacterized protein LOC105177311
TrEMBLA0A2G9G7083e-46A0A2G9G708_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-11C2H2-like zinc finger protein