PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678320752
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 276aa    MW: 30615.3 Da    PI: 7.3504
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678320752genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  +          weF+++ F++g+k++l +i+
     678320752  21 FLTKAYQLVDDPTVDDLISWNDDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDL---------WEFSNEFFRRGEKRKLGEIQ 108
                   9***************************************************************9987.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     678320752 109 RRKM 112
                   **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5317110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.17E-3418110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSGDSGASGK SEARRSFIPP FLTKAYQLVD DPTVDDLISW NDDGTTFIVW RPAEFARDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVVPDLWE FSNEFFRRGE KRKLGEIQRR KMSAAAVVVP  120
TPEPIRTSTG ESGEEQAISS NSLPATAPPA LSLSTHSAWS ATAEENSRLR KENLRLSKEL  180
NQLRSLCGNI YSLMSNYATT SSAESAGDAE EEIGCTAMAL RRREPEENPC PRIFGVNIGA  240
KRPRGEAMDL SPPRLASGEP EPLDLDTKKN QRVVAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-26911017129Heat shock factor protein 1
5d5v_B9e-26911017129Heat shock factor protein 1
5d5v_D9e-26911017129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RRGEKRK
296103RRGEKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678320752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083096.14e-87heat stress transcription factor B-2b-like
TrEMBLS8E8F54e-93S8E8F5_9LAMI; Uncharacterized protein
STRINGMigut.A00803.1.p1e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-70heat shock transcription factor B2A