PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678319675
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 300aa    MW: 34067.5 Da    PI: 6.9776
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678319675genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2066125357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 R+++t+eql++Lee+++   r+psae+++++ ++l    +++ ++V++WFqN++a+ek+
  678319675  66 ARWSPTPEQLQALEEMYRHgVRTPSAEQIQQIVARLrrfgRIEGKNVFYWFQNHKAREKQ 125
                6*****************99**************************************97 PP
2Wus_type_Homeobox111.25.6e-3665127365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Lee+y++G+rtP++e+iq+i a+L+++G+ie+kNVfyWFQN+kaRe+q++
          678319675  65 SARWSPTPEQLQALEEMYRHGVRTPSAEQIQQIVARLRRFGRIEGKNVFYWFQNHKAREKQRK 127
                        68***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-563130IPR001356Homeobox domain
PfamPF000465.3E-1866125IPR001356Homeobox domain
SuperFamilySSF466896.57E-1366130IPR009057Homeodomain-like
CDDcd000863.41E-667127No hitNo description
Gene3DG3DSA:1.10.10.606.6E-967125IPR009057Homeodomain-like
PROSITE profilePS5007110.93267126IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MRMPEFELES DDHLHCKVVS PPPPPPGGMS RCSNTFHAKP SPYLGLPAWD QPLKRNACTG  60
PPLVSARWSP TPEQLQALEE MYRHGVRTPS AEQIQQIVAR LRRFGRIEGK NVFYWFQNHK  120
AREKQRKRRR LELLAAKKMQ ELDPLEQPHH QSGNNDNNAS QRFSVTAESY QCITRICFLP  180
GSVKCFSEHQ STRWSTASNC SLSWKGWQGD LHQQIAAVKS SESEACWPSE LPSCMFTQQK  240
LVPFEAAGTS EIKETQTLEL FPIKETEMSA TADGVEEEEE YGAAASVPNY FFEFLPVRGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125129RKRRR
2126130KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678319675
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-26WUSCHEL related homeobox 1