PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678318192
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 284aa    MW: 31157.9 Da    PI: 6.7804
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678318192genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47.4e-17179213135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  678318192 179 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 213
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.28E-14172235No hitNo description
PROSITE profilePS5011411.503173209IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-15173227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.6E-14177211IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.08E-13178225No hitNo description
PfamPF003209.8E-15179213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEYLADFSAA DNGVGGALHF AVDELLNFSD ETMADTFLEV PAANSGDTST LTRVESCNSS  60
VSGGGDGHFD WKSFDECQFA GSVPYIQECD AELEWLSNFV EESFSNDDHR FIPATGAAVN  120
TASPAPPTVF PADVSVPGKA RSKRSRAAPC DWSSRLLHVA PPAKQEALVA ETGTPPRKCL  180
HCASEKTPQW RTGPMGPKTL CNACGVRYKS GRLVQEYRPA ASPTFVAAKH SNSHRKVMEL  240
RRQKEVQRQQ QLNAQVSIFK GCDEFLIHHH HTTLLKGHDL RRMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678318192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072418.11e-109GATA transcription factor 12-like
SwissprotO826327e-65GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A4D8YRS51e-123A0A4D8YRS5_SALSN; Uncharacterized protein
STRINGMigut.I00908.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-67GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]