PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678317403
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 284aa    MW: 32356 Da    PI: 4.7766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678317403genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-184698456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  678317403 46 KRRLNFDQVKALEKNFEVDNKLEPERKLKLAQELGLQPRQVAVWFQNRRARWK 98
               4466779*********************************************9 PP
2HD-ZIP_I/II123.31.2e-3944135192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ +qvk+LE++Fe ++kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk++ e+L++e+e+  +e++
    678317403  44 EKKRRLNFDQVKALEKNFEVDNKLEPERKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKAEYDALKHSLEKLHHENETFLKEIE 135
                  69**********************************************************************************99888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1938102IPR009057Homeodomain-like
PROSITE profilePS5007117.00640100IPR001356Homeobox domain
SMARTSM003897.5E-1643104IPR001356Homeobox domain
CDDcd000863.81E-1745101No hitNo description
PfamPF000461.9E-154698IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-1948107IPR009057Homeodomain-like
PRINTSPR000311.0E-57180IPR000047Helix-turn-helix motif
PROSITE patternPS0002707598IPR017970Homeobox, conserved site
PRINTSPR000311.0E-58096IPR000047Helix-turn-helix motif
PfamPF021833.3E-13100141IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKGLADPDLF AGSDGQNQAN KAVHMRDFHA MLDEEAEESC QVMEKKRRLN FDQVKALEKN  60
FEVDNKLEPE RKLKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGVLK AEYDALKHSL  120
EKLHHENETF LKEIEDLKSQ LKEDRENGDD LKKQTLVTHP GAEMNVEIAL TSQESPAEMK  180
IEIRKEILGG NSDSDSSAIV NEDNSSSPTA AISSSNAHQV PGSAPQINPS FEIYDGETIF  240
AEAHKAYCHP HFVKIEEPNF LCEDSCSSFF AEDPAPSLHW YEWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678317403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022884552.17e-80homeobox-leucine zipper protein ATHB-6-like isoform X1
RefseqXP_022884553.16e-80homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBLA0A2G9I4D61e-78A0A2G9I4D6_9LAMI; Transcription factor HEX
STRINGMigut.L00161.1.p3e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-53homeobox protein 16