PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678317239
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 364aa    MW: 39896.8 Da    PI: 6.9458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678317239genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-165599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W+ eE+ ++++a +++G +tW++I +++g ++t+ q++s+ qk+
        678317239 55 REKWSDEEHSRFIEALRLYG-RTWRKIEEHIG-TKTAVQIRSHAQKF 99
                     789*****************.55*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1549103IPR009057Homeodomain-like
PROSITE profilePS5129419.29250104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-852100IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-1653102IPR006447Myb domain, plants
SMARTSM007172.6E-1054102IPR001005SANT/Myb domain
PfamPF002496.8E-145598IPR001005SANT/Myb domain
CDDcd001675.75E-1057100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTTQVGFMDY ELGLEQQSFD GFEATSAVIQ SKDQSNPSDV FSPKARKPYT ITKQREKWSD  60
EEHSRFIEAL RLYGRTWRKI EEHIGTKTAV QIRSHAQKFF CKMVRDSNMG DADHVDIIEI  120
PPPRPKRKPV HPYPRKQNAS SKPGLAVEKP VKSALESPPE LENQSPKSLL SALASESSGG  180
TDSFVPNSSP SSATSPLVNK IGDVSCSGVL RDGEDEHSSL DDQMLEEPVT EDPNESSGKF  240
LKLFGKTLVI AETGGPSSSI AISSHEQAAA SILIPVRVIP LKFAMMNETH MDVCYPIALP  300
WLTLCANSST LPCEDTKEQS STDSNSDSAS GTTQLSRKAS KTPTTNSRKG FRPYKKMFTR  360
AGSP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678317239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085926.15e-77protein REVEILLE 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-40MYB_related family protein