PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678315709
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 314aa    MW: 35564.8 Da    PI: 6.6075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678315709genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-083073445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+eE + +  a +++  +   +W ++a++++ g+t  ++k  + 
        678315709 30 WTAEENKAFEYALTLFDEKmpdRWQKVAAMVP-GKTVDDVKRQYK 73
                     ********************************.********9997 PP
2Myb_DNA-binding41.72.7e-13141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ qky
        678315709 141 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQKY 185
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.8252578IPR017884SANT domain
SMARTSM007173.6E-62678IPR001005SANT/Myb domain
SuperFamilySSF466895.61E-112883IPR009057Homeodomain-like
CDDcd001679.25E-73075No hitNo description
PfamPF002491.5E-53074IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11133191IPR009057Homeodomain-like
PROSITE profilePS5129419.564134190IPR017930Myb domain
SuperFamilySSF466894.74E-16136189IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-17137189IPR006447Myb domain, plants
SMARTSM007172.1E-11138188IPR001005SANT/Myb domain
CDDcd001678.80E-10141186No hitNo description
PfamPF002491.5E-11141185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNWGMEILLP NPYVSSLTWV AEDSSRSTMW TAEENKAFEY ALTLFDEKMP DRWQKVAAMV  60
PGKTVDDVKR QYKELEDDVS SIEAGLYPVP GYSNTSSLCM LEWGSSGHRY NGGIKTPYSC  120
RKSSVAATAR PADHERKKGI PWTEDEHKLF LMGLKKYGKG DWRNISRNFV ISRTPTQVAS  180
HAQKYFIRQL NGGKDKRRAS IHDITTLSLE QEAKTPTEST KKSPSPEQSP VQKLPYHWSQ  240
SNNEPFGSQG EGGIFGSIPF EASSYWQHLQ GEAVEEALLA AQDVFLQRQI GFQYPVHERV  300
AFYCNDELNH LDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1530951176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678315709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.11e-119transcription factor DIVARICATA isoform X1
RefseqXP_020550520.11e-119transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-110DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D8YRZ71e-111A0A4D8YRZ7_SALSN; Uncharacterized protein
STRINGXP_006488482.11e-103(Citrus sinensis)
STRINGXP_006425017.11e-103(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-92Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]