PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678314129

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 321aa MW: 36277.3 Da PI: 9.4819

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678314129	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.7e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtd+el+ +yL +k++++++e+ ++ vd++k+ePwdLp k+k +e+ewyf+s rd+ky+tg r+nrat sgyWk+tgkdke+++ + l 678314129 11 LPPGFRFHPTDQELIAYYLINKIADERFET-GAMGVVDLNKSEPWDLPGKAKMGETEWYFYSLRDRKYPTGVRTNRATGSGYWKTTGKDKEIHDGsTADL 109 79************************99.89***********999999***********************************9745566 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+grap+gekt+Wvmheyrl 678314129 110 AGLKKTLVFYRGRAPRGEKTNWVMHEYRL 138 9************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-59	7	184	IPR003441	NAC domain
PROSITE profile	PS51005	56.29	11	184	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEAKVVSGEK LPPGFRFHPT DQELIAYYLI NKIADERFET GAMGVVDLNK SEPWDLPGKA 60 KMGETEWYFY SLRDRKYPTG VRTNRATGSG YWKTTGKDKE IHDGSTADLA GLKKTLVFYR 120 GRAPRGEKTN WVMHEYRLHH KSSHRTTKVR LSLHVFFSYP SRIEVKNEQF VQLEEWVVCR 180 VFQKTTGGKK PSPKSKAVAR PSCSQQPQNI QLPAGKFLTP AEIQRLNKVV FSNTASPTIM 240 HLPFLLPPAM TYLHGGDGSG FSISGPNSRF GNLVAPTTVP PFGALSSMTS DVAVSREYTE 300 DTRNCFMCEE QYPEMDTYWT C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-50	11	190	20	174	NAC domain-containing protein 19
3swm_B	9e-50	11	190	20	174	NAC domain-containing protein 19
3swm_C	9e-50	11	190	20	174	NAC domain-containing protein 19
3swm_D	9e-50	11	190	20	174	NAC domain-containing protein 19
3swp_A	9e-50	11	190	20	174	NAC domain-containing protein 19
3swp_B	9e-50	11	190	20	174	NAC domain-containing protein 19
3swp_C	9e-50	11	190	20	174	NAC domain-containing protein 19
3swp_D	9e-50	11	190	20	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678314129

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082111.1	1e-104	NAC domain-containing protein 92
Refseq	XP_020550032.1	1e-104	NAC domain-containing protein 92
Swissprot	Q9FLJ2	2e-70	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G9HCT9	1e-100	A0A2G9HCT9_9LAMI; Uncharacterized protein
STRING	XP_009622905.1	4e-93	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	7e-84	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]