PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678311131
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 337aa    MW: 37447.6 Da    PI: 5.0317
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678311131genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.9e-36271172101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++++++isw+e+g+sf+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ l++i+
     678311131  27 FLTKTFQLVDDHTVDDVISWNEDGSSFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKKRLCDIQ 114
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     678311131 115 RRK 117
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3721110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5723116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.96E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAPQTVDRGG GGESPAPDGA RSLPTPFLTK TFQLVDDHTV DDVISWNEDG SSFIVWNPTE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND CFRRGEKKRL CDIQRRKIAA  120
TVTPPTEAPL QPTTAAPPRA VSPCDSGEEL VHSSNSSPPP PALEFSGTSA DLVGENERLR  180
KENVQLNKEL NQMKSLCNNI YVLMSNYGND QKSNGSSDGS NLFSSENAVK PLDLLPMTSF  240
CSEIETGVEK CPEDDNLPSA PEQANARLFG VHIGAKRLRE VDRSSPVDQD EDVAKMDLQL  300
QQPGPRIKSE PSDATNQMEC RWPNRCSSPP EHHTSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241411617129Heat shock factor protein 1
5d5v_B2e-241411617129Heat shock factor protein 1
5d5v_D2e-241411617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678311131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-148heat stress transcription factor B-2a
RefseqXP_011076202.11e-148heat stress transcription factor B-2a
SwissprotQ9SCW41e-81HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2Z4K5C01e-126A0A2Z4K5C0_TECGR; HSF2 protein
TrEMBLA0A4D9BG031e-126A0A4D9BG03_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00357.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-84heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]