PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678311057
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 646aa    MW: 71645.1 Da    PI: 9.1106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678311057genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07536585147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +      +Rt  ++k++w ++
        678311057 536 RRPFSVSEVEALVEAVEKLGTGRWRDVKMRAFenaDHRTYVDLKDKWKTL 585
                      678999********************97666679*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.17E-8343426IPR029071Ubiquitin-related domain
PROSITE profilePS500539.765347417IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.906.6E-4349413No hitNo description
PROSITE profilePS5129416.787531590IPR017930Myb domain
SMARTSM007174.5E-8535588IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10536586IPR009057Homeodomain-like
SuperFamilySSF466891.64E-15537618IPR009057Homeodomain-like
CDDcd116602.74E-17537587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MSCKEPGFGF RAYEAPVIPR APRSIRGSRR KKLVEKDHPC SFELLAAVAG KLLEESEGSA  60
SCNAAAEDKA KLQEGNDEPP SNGKAFNSGI FDRGSCAESA FIPKITMKEH NFSDSFKGLA  120
ESETNPPSSH INMDARSKVD TNNTGKRICQ LSVAEPLNSI ADNGPEVLSG HEKYEDPTGS  180
CVNTNSLVTS ESSVKPLYRK LIPHAFDQKQ RNNVKLGLRD DDENFIGCDE FSARIRPFRS  240
QSRLGQCRMR KMATSRYWKA AMKRKSYDLC TSSEGTKFFY RYKKFVHPRE RCQQTPFKKR  300
RLFDHSFSAA YGRGCDNTSN SISSVPVAAG GISTYKRSIS KPKEHHVTLS IKSFKVPELY  360
LEMPETETVG SLKRTVLEAF KAILGGGTRV GIFFQGKKIR DDNRTLQQAG ISQCNSLDSL  420
GFALEPSVTD MAAARSEAFP VSPICDADQN RLRSLANPVI GTSAISKGMV EPQTVTNSKE  480
CILFPNAVAP YETSPDGEVS ETMALIPVGP MEMEALSEAP LNQKPKCTDG SQRRTRRPFS  540
VSEVEALVEA VEKLGTGRWR DVKMRAFENA DHRTYVDLKD KWKTLVHTAS IAPQQRRGEP  600
VPHELLDRVL AAHSYWSQHP SKQHKKTHDV EPLKTVDSNK EAVVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-615206431119Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678311057
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858494.10.0PREDICTED: telomere repeat-binding protein 3-like
RefseqXP_012858495.10.0PREDICTED: telomere repeat-binding protein 3-like
TrEMBLA0A0K1SBH80.0A0A0K1SBH8_REHGL; Telomere repeat-binding factor like-protein
STRINGMigut.F00779.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-101TRF-like 2