PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309655

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 828aa MW: 92446.7 Da PI: 6.0353

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309655	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5e-20	94	149	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k 678309655 94 KKRYHRHTARQIHEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 149 688899***********************************************998 PP
2	START	127.4	1.7e-40	294	541	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 la + ++elvk+ + +ep+W +s+ e+g vl +e ++v +++ea ++++vv+m++ +lv +ld + +W e ++ +a+tl+v+ 678309655 294 LAVSSMNELVKMCTTGEPLWARSP--ETGNLVLNVEEYNRVfswnakqnapeFRIEATKETAVVIMNSITLVDAFLDAN-KWMELFPsiisRAKTLQVVH 390 78899*****************..888888888888888888888999*************************.**************** PP TT..............................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS START 87 sg..............................galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgili 154 s ++ +m+aelq+lsplvp R+ f+Ry++ ++g+w+ivd +d q+ +s+ ++pSg++i 678309655 391 SEvsehangslhlvltdllhfpdyktslvrssSTNLQMYAELQVLSPLVPtREAHFLRYCQHnAEEGTWAIVDFPIDGFQNIY-PPSFPYYSRRPSGCII 489 ****************************99999*********************9**********888765.455555668*** PP EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++ng+s+vtw+ehv+++ +h +l s+v+sg+a+ga++w+ lqrqce+ 678309655 490 QDMPNGYSRVTWMEHVEVENTPIHHVLSSFVSSGTAFGARRWLVVLQRQCER 541 ************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.09E-19	80	152	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-21	87	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	91	151	IPR001356	Homeobox domain
SMART	SM00389	1.0E-18	92	155	IPR001356	Homeobox domain
CDD	cd00086	1.45E-17	94	152	No hit	No description
Pfam	PF00046	1.6E-17	94	149	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.045	284	544	IPR002913	START domain
SuperFamily	SSF55961	2.47E-28	285	394	No hit	No description
CDD	cd08875	3.24E-110	288	540	No hit	No description
SMART	SM00234	9.8E-18	293	541	IPR002913	START domain
Pfam	PF01852	2.0E-32	294	541	IPR002913	START domain
SuperFamily	SSF55961	2.47E-28	426	543	No hit	No description
SuperFamily	SSF55961	1.65E-15	576	796	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence Send to blast
MYGDCQVLST MGTNSIPISS DSHHLYPSSL QNTNFSFMAN INPFNIFSPI TPKEEKGISK 60 SKEDILESAS GSEHLEGASA NEQEADEQQP PAKKKRYHRH TARQIHEMEA LFKECPHPDD 120 KQRLKLSQDL GLKPRQVKFW FQNRRTQMKA QQDRQDNVVL RAENESLKNE NYRLQATLRN 180 VVCPNCGGAA ILGEMGFDEQ QLRIENARLK DEYERMCCLV SQYTGRSLPA LGPGPIMAPS 240 LDLDMTPFSR KFEQDSISNC PSDHMMPLPF MPENSHFPTS PLILEEEKSL ALELAVSSMN 300 ELVKMCTTGE PLWARSPETG NLVLNVEEYN RVFSWNAKQN APEFRIEATK ETAVVIMNSI 360 TLVDAFLDAN KWMELFPSII SRAKTLQVVH SEVSEHANGS LHLVLTDLLH FPDYKTSLVR 420 SSSTNLQMYA ELQVLSPLVP TREAHFLRYC QHNAEEGTWA IVDFPIDGFQ NIYPPSFPYY 480 SRRPSGCIIQ DMPNGYSRVT WMEHVEVENT PIHHVLSSFV SSGTAFGARR WLVVLQRQCE 540 RLASLMARNL SDLGVIPSPE ARKSLMNLSK RMIRTFCLNM TTSHGQSWTA LSDSADDTVR 600 ITTRKVTEPG QPNGLILSAV SSSWLPYRHN QVFDFLRDEK RRAQLEVLSN GNSLHEVAHI 660 ANGSHPGNCI SLLRINVASN SSQSVELVLQ ESCSDESGSM VVYATIDVEA IQMAMNGEDP 720 SNIPLLPLGF IIHPMKQTSK ETTKGSKSHL PEEDGMSGCL LTAGLQVLAS TIPTAKLNLS 780 SVTAVDHHIC NIIQQISTLL GSNNGNISSR VPEIEAPETA NNPNLTTE

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence Send to blast

MYGDCQVLST MGTNSIPISS DSHHLYPSSL QNTNFSFMAN INPFNIFSPI TPKEEKGISK  60
SKEDILESAS GSEHLEGASA NEQEADEQQP PAKKKRYHRH TARQIHEMEA LFKECPHPDD  120
KQRLKLSQDL GLKPRQVKFW FQNRRTQMKA QQDRQDNVVL RAENESLKNE NYRLQATLRN  180
VVCPNCGGAA ILGEMGFDEQ QLRIENARLK DEYERMCCLV SQYTGRSLPA LGPGPIMAPS  240
LDLDMTPFSR KFEQDSISNC PSDHMMPLPF MPENSHFPTS PLILEEEKSL ALELAVSSMN  300
ELVKMCTTGE PLWARSPETG NLVLNVEEYN RVFSWNAKQN APEFRIEATK ETAVVIMNSI  360
TLVDAFLDAN KWMELFPSII SRAKTLQVVH SEVSEHANGS LHLVLTDLLH FPDYKTSLVR  420
SSSTNLQMYA ELQVLSPLVP TREAHFLRYC QHNAEEGTWA IVDFPIDGFQ NIYPPSFPYY  480
SRRPSGCIIQ DMPNGYSRVT WMEHVEVENT PIHHVLSSFV SSGTAFGARR WLVVLQRQCE  540
RLASLMARNL SDLGVIPSPE ARKSLMNLSK RMIRTFCLNM TTSHGQSWTA LSDSADDTVR  600
ITTRKVTEPG QPNGLILSAV SSSWLPYRHN QVFDFLRDEK RRAQLEVLSN GNSLHEVAHI  660
ANGSHPGNCI SLLRINVASN SSQSVELVLQ ESCSDESGSM VVYATIDVEA IQMAMNGEDP  720
SNIPLLPLGF IIHPMKQTSK ETTKGSKSHL PEEDGMSGCL LTAGLQVLAS TIPTAKLNLS  780
SVTAVDHHIC NIIQQISTLL GSNNGNISSR VPEIEAPETA NNPNLTTE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070329.1	0.0	homeobox-leucine zipper protein HDG5 isoform X2
Swissprot	Q336P2	0.0	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A2G9HN19	0.0	A0A2G9HN19_9LAMI; Transcription factor, contains HOX domain
STRING	Migut.E00753.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9020	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]