PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678306492

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 382aa MW: 43241.4 Da PI: 4.1685

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678306492	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.8	1e-11	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++ r f kR++ + K A+ELSvLCd+ev +ii + g 678306492 11 IRSEKERRRAFQKRKKALEKSASELSVLCDVEVGMIIQDPFG 52 7778888899**************************965544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-10	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.428	1	47	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.03E-18	2	78	No hit	No description
SuperFamily	SSF55455	4.19E-16	2	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-12	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-8	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-8	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MGRAKLRMEL IRSEKERRRA FQKRKKALEK SASELSVLCD VEVGMIIQDP FGESNEPSVW 60 PPEPEVLERL IECYESRKGG YGSRTKTYHL SDLFKDQTEQ MTEKNNQDNH SVYDEGIGSL 120 SGGELECFVE LLKAKIDTAE RWIDTIMATQ AGNVTVQESR DVYPELWNPE SSCMFQFQPQ 180 ETQLAGLAVQ EIGDLYPEMW KSSDMVQFQR QETQPGAVVG FTVQESGDLY PEMSNLESSD 240 MIQFQPQETQ AGAFAGFTVQ ESGDRYPGMW NLESSNMIQF QPQEIQAGAV AGFTVQESGD 300 LYPGMWNFGT PEVAWFQQQM RATQAVDTVN FPVQESMALH PAIWNFESSG MPPFQPQMML 360 PHSSWPYCYD NGFLVGNDVA LL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MGRAKLRMEL IRSEKERRRA FQKRKKALEK SASELSVLCD VEVGMIIQDP FGESNEPSVW  60
PPEPEVLERL IECYESRKGG YGSRTKTYHL SDLFKDQTEQ MTEKNNQDNH SVYDEGIGSL  120
SGGELECFVE LLKAKIDTAE RWIDTIMATQ AGNVTVQESR DVYPELWNPE SSCMFQFQPQ  180
ETQLAGLAVQ EIGDLYPEMW KSSDMVQFQR QETQPGAVVG FTVQESGDLY PEMSNLESSD  240
MIQFQPQETQ AGAFAGFTVQ ESGDRYPGMW NLESSNMIQF QPQEIQAGAV AGFTVQESGD  300
LYPGMWNFGT PEVAWFQQQM RATQAVDTVN FPVQESMALH PAIWNFESSG MPPFQPQMML  360
PHSSWPYCYD NGFLVGNDVA LL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	25	KERRRAFQKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678306492

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.3	8e-12	M-type_MADS family protein