PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678305736
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 345aa    MW: 32989.6 Da    PI: 8.6728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678305736genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-06106128123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C+k F++   L  H+r+H
  678305736 106 FPCPSCPKAFKSAKALGGHMRVH 128
                89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR009024.1E-54064IPR001399VP6 blue-tongue virus inner capsid protein
Gene3DG3DSA:3.30.160.603.2E-4105129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.56E-6106128No hitNo description
PROSITE profilePS5015712.258106133IPR007087Zinc finger, C2H2
PfamPF139121.1E-5106128IPR007087Zinc finger, C2H2
SMARTSM003550.0053106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
PRINTSPR009024.1E-5148170IPR001399VP6 blue-tongue virus inner capsid protein
SuperFamilySSF576672.56E-6168194No hitNo description
SMARTSM003556.9172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019028Cellular Componentviral capsid
GO:0003676Molecular Functionnucleic acid binding
GO:0005198Molecular Functionstructural molecule activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAEVGGGGGE EEGGGGGGGG VGGEEGRRGG GGGGRGGGER GRGGRGRGRG GGGGGGGDGG  60
GGGGGGGGGG GGGGGGEGGG GGGGGEGGGG GGGGGGGGGE GSANKFPCPS CPKAFKSAKA  120
LGGHMRVHSL TSPTSVPVTG KRRSKNQNGD DNDEGIRRKK KRVEEGKIGG KKICAVCEKC  180
FRSKKAVCGH MRCHPERPWR GLNPASEQAA TSSSSHPNHP SASSCLSSAG RTSAGAVLQS  240
WGSTARRGSN PGAGGGGAAS SEASTLSSTG KNNPAVAAAH ILMFMSRQGT LSQATPDDDQ  300
MNVTTTADDD QMNVTTTTTT TGSGENNNAG CMLPDLNENP PQEEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14149RGGRGRGRG
2140161KRRSKNQNGDDNDEGIRRKKKR
3156161RRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678305736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.15e-12C2H2 family protein