PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678305049
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 430aa    MW: 46656.3 Da    PI: 8.8425
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678305049genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17349383135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C  tkTp+WR gp g+ktLCnaCG++y++ +l
  678305049 349 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRL 383
                99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-14343405No hitNo description
SMARTSM004016.6E-17343397IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24347379IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14347381IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.82E-12348395No hitNo description
PROSITE patternPS003440349374IPR000679Zinc finger, GATA-type
PfamPF003203.5E-15349383IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSLNVAIRLR VKKSVHVGLD IAAAAAIPRR TACRRCLKNN TITKKVRLTL PTEACHEVTD  60
AGSGTVAVGE PLPSCFKSLL LLVSLLCPAS LPPRRNKKSY HSHFLLLSNH RQKEMGPNLV  120
DEIDSASNFF DQIDDLIKFP PEVECFSGSG GSNDIPTMWN VSLPDSGDIF SCSTADNFLS  180
ELSVPYEDIV QLEWLSAFVE DSFSGGGMTI GTEDNLCVEK DPSAQRFQTS SPVSVLESSS  240
SSSNCAGINT QSPPPSPSRQ RARSKRPRPA TFNPRAGIQL IPPSSSSFIE TPRPFIGERA  300
ENLHASPVND VTEPTAPEPP KKKIKITAPK LATDTASPPP PPPQMIRKCM HCEITKTPQW  360
RAGPMGPKTL CNACGVRYKS GRLLPEYRPA ASPTFTPSLH SNSHKKVIEM RTRAVDATPT  420
ATPTTSPRLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264268KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678305049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084325.11e-110GATA transcription factor 8 isoform X1
TrEMBLA0A2G9GV451e-104A0A2G9GV45_9LAMI; GATA transcription factor
STRINGXP_009598426.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-38GATA family protein