PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678303220
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 285aa    MW: 31807.6 Da    PI: 9.1174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678303220genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY894e-28143201259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs e++++++ tYegeH h 
  678303220 143 RDGYQWRKYGQKVTRDNPCPRAYFKCAFApSCPVKKKVQRSIENQSILVATYEGEHSHA 201
                7***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-27132201IPR003657WRKY domain
PROSITE profilePS5081123.617137203IPR003657WRKY domain
SuperFamilySSF1182906.15E-24138201IPR003657WRKY domain
SMARTSM007741.0E-31142202IPR003657WRKY domain
PfamPF031062.2E-23144200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEFDLNLNPS SWNVEREFLS PVKEPGASFS FIAAKDDEGG AMREELRRLN EENKNLTRLL  60
GVISERCEDL KHQLTTKQRS NGDMGPTHHK KQKTGGSDDN GPSESSSSDK SSFKKLSEGQ  120
QIKATITQKF VKIDASDTSL IVRDGYQWRK YGQKVTRDNP CPRAYFKCAF APSCPVKKKV  180
QRSIENQSIL VATYEGEHSH ARAGNSDTGH RLSRTYEPKG VADIMKEKLG REETPSLSSK  240
FDSLELQQSF VEKMASTLTK NPNFTAALAA AISGDFQLSN HAEKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-181412001371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678303220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628322.12e-72probable WRKY transcription factor 40
TrEMBLA0A0D5YA217e-72A0A0D5YA21_SALMI; WRKY protein
STRINGcassava4.1_011696m8e-72(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-57WRKY DNA-binding protein 40