PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678300249
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 327aa    MW: 35826.7 Da    PI: 6.365
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678300249genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17251284134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  678300249 251 CLHCEITKTPQWRTGPMGPKTLCNACGVRYKSGR 284
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-7024326IPR016679Transcription factor, GATA, plant
SMARTSM004013.9E-16245295IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.082249281IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-15250308No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14250282IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.20E-14250297No hitNo description
PfamPF003209.3E-15251284IPR000679Zinc finger, GATA-type
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MERGDNTDTF FSLAIVQGLK VFNFLQAMAQ SFIDEIDCGN LFDPIDDLMK FPADVECGAA  60
AGYMVGSSDS KDITSICSAA FPEADNLYSG SHTDDLLAKL SVPYEDIVQL EWLSTFVEDS  120
FSFGGMTIGK ENLLTKKETS PEHFQSCSPV SVLESSSSSS SSLTGGKSIP PLSSNYQRTR  180
SKRPRPPTFN PRAGIQLIET PTSFVAVPSE SENFAVEEEM MKANAPESQK KRKLKMTPPP  240
APKEVQTIKK CLHCEITKTP QWRTGPMGPK TLCNACGVRY KSGRLFPEYR PAASPTFVPS  300
LHSNSHKKVI EMRTKVVDAA ATIEKVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RTRSKR
2181185KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678300249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084325.11e-111GATA transcription factor 8 isoform X1
TrEMBLA0A2G9GV451e-108A0A2G9GV45_9LAMI; GATA transcription factor
STRINGXP_009598426.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-40GATA family protein