PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299372
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 249aa    MW: 28566.9 Da    PI: 4.5261
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299372genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1855108356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++++eq++ Le+ Fe ++++  e+++++Ak++gL+ rq+ +WFqNrRa++k
  678299372  55 KKRRLKPEQVQFLEKTFELENKLEPERKAQIAKEVGLQPRQIAIWFQNRRARYK 108
                455899***********************************************9 PP
2HD-ZIP_I/II118.63.4e-3855145292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrl+ eqv++LE++Fe e+kLeperK+++a+e+glqprq+a+WFqnrRAR+ktk lEkdy+ Lk++y++lk++  +L ke+ee+ +e++
    678299372  55 KKRRLKPEQVQFLEKTFELENKLEPERKAQIAKEVGLQPRQIAIWFQNRRARYKTKLLEKDYTCLKASYEKLKADYVKLFKENEEMSNEIR 145
                  9*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.4E-1653114IPR001356Homeobox domain
CDDcd000866.34E-1655110No hitNo description
PfamPF000461.4E-1555108IPR001356Homeobox domain
PROSITE profilePS5007116.45555110IPR001356Homeobox domain
SuperFamilySSF466891.33E-1755118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-1857116IPR009057Homeodomain-like
PRINTSPR000311.6E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.6E-590106IPR000047Helix-turn-helix motif
PfamPF021831.8E-10111150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESSNEVQDC SASEKVFIKT ENAPCDPPVW VSSVQGDADK TENSCEELDG GCLPKKRRLK  60
PEQVQFLEKT FELENKLEPE RKAQIAKEVG LQPRQIAIWF QNRRARYKTK LLEKDYTCLK  120
ASYEKLKADY VKLFKENEEM SNEIRVLTEK ICGGQQEETK EEKSDQIFPP EKAAEAVTPA  180
AASSDVLDSD SMHCPDSEYS QEEEENTPCN ILLHHPFCPK LEFESHDDLQ PNCCNLGFPV  240
QNQGTWFWH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360PKKRRLKP
25459KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.17e-68homeobox-leucine zipper protein HAT5-like
SwissprotQ022832e-38HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2G9HCJ15e-74A0A2G9HCJ1_9LAMI; Transcription factor HEX
STRINGMigut.E00117.1.p2e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-39homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]