PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678297269
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 428aa    MW: 46691.7 Da    PI: 7.615
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678297269genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309e-10106125525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                lC+++a+ G Ck+Gd+CkF H
  678297269 106 LCNHWAQ-GSCKFGDNCKFLH 125
                9******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8872248IPR000571Zinc finger, CCCH-type
SMARTSM003560.582347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6101126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418101128IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5103127IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7105125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-7105124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.6E-16125241IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.7E-5132171IPR001680WD40 repeat
SuperFamilySSF509789.16E-46133422IPR017986WD40-repeat-containing domain
PfamPF004000.0011135171IPR001680WD40 repeat
PROSITE profilePS5008213.416139180IPR001680WD40 repeat
PROSITE profilePS5029421.094139341IPR017986WD40-repeat-containing domain
PRINTSPR003203.1E-6158172IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780158172IPR019775WD40 repeat, conserved site
SMARTSM003202.4211248IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.3E-28242421IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.027255292IPR001680WD40 repeat
PfamPF004000.064260292IPR001680WD40 repeat
PROSITE profilePS5008211.31262301IPR001680WD40 repeat
PRINTSPR003203.1E-6279293IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6E-5295332IPR001680WD40 repeat
PfamPF004005.7E-4297331IPR001680WD40 repeat
PROSITE profilePS500829.172302341IPR001680WD40 repeat
PRINTSPR003203.1E-6319333IPR020472G-protein beta WD-40 repeat
SMARTSM003206.1336379IPR001680WD40 repeat
SMARTSM0032053382419IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDVDGGRRFS GRLGPSSSGE NGKQQKVCYH WRQGKCNRFP CPFLHSELPT ASNGKRTSQG  60
NGMDDDYRGG LRRSTNYNFS TNRVWRAPTQ QAAGAKATFV KKMDKLCNHW AQGSCKFGDN  120
CKFLHQWSSG DSFSLLAPLE GHQQVVTGIV LPSGSDKLYT GGQDETVRVW DCQSGQLAGV  180
IKLEGAVGCM LSEGPWVFIG LPNLVKAWNI QTNTDLSLSG PVGQVYSLVI GNDLLFSGTQ  240
EGTILVWKFN FAGNCFDPAA SLKGHTLAVV TMVVGGNRLY SGSMDHSVKV WSLETLQCVQ  300
TLSGHTDVVM SVLCWDQFLL SASLDKTVKV WAATDSGSLE VTYTHNEEHG ILGLCGMHDS  360
ESKPVLFCSC NDNCVWVYDL PSFHERGKIF SKKETRAMQG GPGGIFFTGD GSGQVRVWKW  420
SSEPTATP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221364188323Tako8
6g6n_A4e-221364188323Tako8
6g6n_B4e-221364188323Tako8
6g6n_C4e-221364188323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678297269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076248.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLS8E4C30.0S8E4C3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00387.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1