PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678297148
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 350aa    MW: 37870.8 Da    PI: 6.5073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678297148genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31169227259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs+fpr+YY+C+s+ gC+++k+vers++dp++++itY++eHnh+
  678297148 169 SDLWAWRKYGQKPIKGSPFPRAYYKCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHQ 227
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-31163229IPR003657WRKY domain
PROSITE profilePS5081132.191163229IPR003657WRKY domain
SuperFamilySSF1182905.62E-26166229IPR003657WRKY domain
SMARTSM007744.8E-37168228IPR003657WRKY domain
PfamPF031061.6E-25170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCSQWMENNY QGDLTDIIRA SNCGGRGGGG GAGEAEPWEF PTNYLANPDE DFGDPFTHFG  60
DPLLRDTDAQ VSGFLHPSTF FKAGFEEAGG GFPVGKATPE PPCADSPAAQ KRLLVQTDGF  120
LTKMDGSDMP ISSPRITGTK RRKNQAKKVV CIPAPLPANA RSSGEVVPSD LWAWRKYGQK  180
PIKGSPFPRA YYKCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHQWPT QRNALAGSTR  240
YPASRKTQNP METHETPPSA ASASSSSSTV KKESGHQDST IYNNPTLPGS NHYDNDHLFA  300
ESLETLLARG FPADGEGGGA LPNNPFTFFS WNCDHGGDDD LLPHPDAKTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-23143230280Disease resistance protein RRS1
5w3x_D6e-23143230280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12330GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678297148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096716.12e-95probable WRKY transcription factor 14
SwissprotQ9SA804e-69WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A2G9I5D26e-93A0A2G9I5D2_9LAMI; Uncharacterized protein
STRINGXP_010036632.15e-80(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-65WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]