PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678297094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25410.4 Da PI: 4.8952 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 67 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k++r++lg+f t e+Aa+a++ a+++l+g 678297094 67 PVYRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTLEMAARAHDVAALALRG 117 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-14 | 67 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.445 | 68 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-32 | 68 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-29 | 68 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 68 | 127 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.04E-31 | 69 | 127 | No hit | No description |
PRINTS | PR00367 | 1.2E-8 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MKKLTLCYSD PFSGGAQDLL WSSGSPIIDT SSDNGTRATL SDEEVILASN NPKKRAGRKK 60 FRETRHPVYR GVRRRNSGKW VCEVREPNKK TRIWLGTFPT LEMAARAHDV AALALRGKSA 120 CLNFADSAWR LPVPASTDPK DIQKAAAEAA EAFAPEPQPR EKEEEPETSS SASSLLPSTT 180 PEDAFFMEQD TEYGLLTNMA EGLMVPPPQQ VYYDDVEDGY DMSLWNFSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 66 | 124 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678297094 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069244.1 | 2e-93 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 7e-70 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | B3TPP3 | 1e-93 | B3TPP3_SOLHA; CRT binding factor 3 | ||||
STRING | Solyc03g026270.1.1 | 1e-89 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-54 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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