PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678297058
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 308aa    MW: 34136.2 Da    PI: 8.9004
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678297058genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36241152102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++++isw+e+g++f+v++++ fak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k+ll++i+
     678297058  24 FLTKTYQLVDDHGVDDIISWNEDGSAFIVWNPTGFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRKGEKKLLCQIQ 111
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     678297058 112 RRKI 115
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5720113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3722113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDTVTVDRSG GGGSDSSKPI PTPFLTKTYQ LVDDHGVDDI ISWNEDGSAF IVWNPTGFAK  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNDCFR KGEKKLLCQI QRRKITAMAP  120
PPMVLPLRPT SSAHPRPTAS ASQSGEEQVL SASKSPGNTT AAADLISENE RLRNENDRLN  180
NELNKMKDLC KNISVLVSSY GRNQTSIDQI SRGFKGSSPE KEVKPLDLLP MTRFCEGTET  240
AAIVAPAGNR SNTRSAVEER DARLFGASIG VKRRNHEEGG WSSSDTDLQL HQPRARIKSE  300
PLDPDKNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24611312129Heat shock factor protein 1
5d5v_B2e-24611312129Heat shock factor protein 1
5d5v_D2e-24611312129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678297058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-122heat stress transcription factor B-2a
RefseqXP_011076202.11e-122heat stress transcription factor B-2a
SwissprotQ9SCW42e-77HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A4D9BG031e-114A0A4D9BG03_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00357.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-68heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]