PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678296295

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Nin-like

Protein Properties

Length: 291aa MW: 33092.5 Da PI: 5.9482

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678296295	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.6e-26	119	168	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++s+yF+lpi++AA eL+v++T+LK++CR++GIkRWPhRk+ sl 678296295 119 SRLSKEMISQYFYLPIAKAAEELKVGVTYLKKRCRELGIKRWPHRKLMSL 168 6899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.552	102	188	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-21	121	168	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MPMALQDYQV QEYEQVFAFP LLYDFSDSGL HDWDFYGGIG TLDLLLTDDA PSCHPQEGFL 60 WDSSLWEDIN SASSQKQQMT LKSSGEDGAK GGESPCPENP IVGKKTSRRV HRKDETRASR 120 LSKEMISQYF YLPIAKAAEE LKVGVTYLKK RCRELGIKRW PHRKLMSLQT LIHNVQELGK 180 ERRGVLGDEY THILEEEKKL MEEIPDLRLD DRTKRLRQAC FKANYKKRKL MGMAVSFPRK 240 PSSSNQQVDA IDEGHVSSVG STGAEVDDEE IKCLIEGFCS SASSDVELLK Y

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678296295

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071711.1	2e-54	uncharacterized protein LOC105157108
STRING	XP_010258431.1	4e-51	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-30	RWP-RK domain-containing protein