PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678295669
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 274aa    MW: 30843.8 Da    PI: 7.8995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678295669genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q+G+g+W+++++t g+ R+ k+c++rw +yl
        678295669 14 KGPWTPEEDIILVTYIQQHGPGNWRAVPKTTGLLRCSKSCRLRWANYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.42.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+  ++++ ++ G++ W++Ia++++  Rt++++k++w+++l
        678295669  67 RGKFTEDEERTIIRLQALIGNR-WAAIASYLP-YRTDNDIKNHWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.182961IPR017930Myb domain
SuperFamilySSF466893.31E-3012108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002498.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-231568IPR009057Homeodomain-like
CDDcd001675.56E-101661No hitNo description
PROSITE profilePS5129424.4562116IPR017930Myb domain
SMARTSM007176.9E-1666114IPR001005SANT/Myb domain
PfamPF002499.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2369116IPR009057Homeodomain-like
CDDcd001674.18E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRLPCCDKI TVKKGPWTPE EDIILVTYIQ QHGPGNWRAV PKTTGLLRCS KSCRLRWANY  60
LRPGIRRGKF TEDEERTIIR LQALIGNRWA AIASYLPYRT DNDIKNHWNT HLKKRVSKQE  120
NGESSSESRG QWEKKLQTDI QMVKKAFCEA LSHDKSVPSP DSSLLSNLEQ TKPAAYAHST  180
ENISRLLQNW MKKSPSEEEE GATLLSSNNS DSVPMPDPDA KPESGSWNQG LGAHTKPLLK  240
AQEPLSLLEK WLLEDSGTQG GDGFVDIYSL DESL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678295669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071639.11e-107myb-related protein 306
SwissprotP813921e-105MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A059PRE31e-106A0A059PRE3_SALMI; MYB-related transcription factor
STRINGMigut.I00176.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.15e-92myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]