PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678295324 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NF-YC | ||||||||
Protein Properties | Length: 242aa MW: 26384 Da PI: 4.6512 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 39.2 | 1.5e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++++v++ ++fdfl ++v + 678295324 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVNSLHLKQCVQSYNVFDFLKEVVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 3.2E-13 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-18 | 1 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.57E-19 | 1 | 71 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLQR GAKTVNSLHL KQCVQSYNVF 60 DFLKEVVSKV PDFTNSDGAA DPSKRRRVVS NETNGSDEEL KRGITQETCH TTGAVRGRGR 120 GRGRGRGRAS RATEREPPHT EAEAVSTATH PSTKFTANPD NESKIDDSTE YTKAPGSRNF 180 DLNAQVDDGS GKMACTSAAA AAASSEDFPA LSEIDRMPID TLHIMQAGSR PEEEEEDYDE 240 EV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-14 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 87 | KRRRV |
2 | 117 | 127 | RGRGRGRGRGR |
3 | 119 | 128 | RGRGRGRGRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678295324 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553014.1 | 3e-81 | dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A2G9GZU2 | 1e-85 | A0A2G9GZU2_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1) | ||||
STRING | Migut.N01867.1.p | 3e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7960 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-52 | nuclear factor Y, subunit C11 |