PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678294995
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 311aa    MW: 33825.6 Da    PI: 5.6637
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678294995genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.6e-18223256134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C + kTp+WR gp g+ktLCnaCG+++++ +
  678294995 223 CTHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGR 256
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-6916307IPR016679Transcription factor, GATA, plant
SMARTSM004012.6E-14217271IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.202217253IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14219280No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13220254IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.63E-13222271No hitNo description
PfamPF003201.5E-15223256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MATSRTTSQV CRDDDVWCFT GINAVEEFHV EDLLNLDFAD DGGFFEGDKG VNRHGCGKNS  60
GSSCSTFSGA DEFENLAAGE FSGPVEGLES LEWLSQFVED STAELSLLFP TGSFAVEDSV  120
NDPPVKAQAT FVDAEVPRKR RSKRLRTSVL PWALLSPPLS SVDSSSTSSS SHGSSSLPVF  180
AFPHPAPDPD WFSSAEKSPP PPPPPLEKKP KRRPDSESSG RRCTHCLVQK TPQWRTGPLG  240
PKTLCNACGV RFKSGRLFPE YRPACSPTFS QELHSNSHRK VLEMRGRKET STAIDDRSGF  300
VTPVVSVVVS D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678294995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.22e-98GATA transcription factor 5-like
RefseqXP_020551667.12e-98GATA transcription factor 5-like
SwissprotQ9FH571e-48GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G9GRK73e-92A0A2G9GRK7_9LAMI; GATA transcription factor
STRINGMigut.N01274.1.p3e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.18e-41GATA transcription factor 7