PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35254-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 583aa    MW: 63548.8 Da    PI: 8.3759
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35254-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.7e-2557158199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +
  TRIUR3_35254-P1  57 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyQQVR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGD 147
                      99****************************975554.4569************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  TRIUR3_35254-P1 148 DGELRLGVRRA 158
                      9999***9986 PP
2Auxin_resp111.39.7e-37183264183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      +a++++++svF+++YnPra++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++g++++dp+rW++SkW+sL+
  TRIUR3_35254-P1 183 VANSLKHRSVFHICYNPRAAASEFIVPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGIITGINEVDPIRWTGSKWKSLQ 264
                      68999*****************************************************.9*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-4541196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-3953158IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-2355157No hitNo description
PfamPF023627.4E-2357158IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21157159IPR003340B3 DNA binding domain
SMARTSM010193.7E-2457159IPR003340B3 DNA binding domain
PfamPF065075.2E-30184264IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MHARTHADPA TDEVYARLAM VAEGEVFEKN MGGGRFEGED DMEDGDGERK SRMLHMFCKT  60
LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ VRPSQELVAK DLHGAKWRFR HIYRGQPRRH  120
LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKSF NSNSSKIHTL  180
SAVANSLKHR SVFHICYNPR AAASEFIVPY WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR  240
SGIITGINEV DPIRWTGSKW KSLQVRWEDG TDCNSQNRLS PWDIEIVGGS VSIAQSLSAS  300
SSKRTKLCPQ GNVDVPTLYG NGRPDSVGAD KLPRVLQGQE LMGSGTHRVT CPPQPGGATE  360
FRRSDGTGFL ADTRSCMLSG PASRLPPQSP YFAYQPVGFG ESVGFPEVLQ GQEVCQTVPL  420
FQGMVSDTCS AKGGYGLYNY MCTSSAMNRG FSSAAQGYPL SLSTPPPAEV ASPSSTVAAP  480
QLWLASKNNE EAAIGSQPNP LGTRKASGDG AAKLGSDGRK VARTSCMLFG FSLTEKMLPT  540
EEDCAKEGNH EVDCQNPRML DLFGYNRATP GALHALCAAP LGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-80728584353Auxin response factor 1
4ldy_B3e-80728584353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761300.0AY376130.1 Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175130.10.0auxin response factor 3-like
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLM7ZPU60.0M7ZPU6_TRIUA; Auxin response factor
STRINGTRIUR3_35254-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-123ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]