PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35130-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 548aa    MW: 62634.2 Da    PI: 7.7917
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35130-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.5e-131741897
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +p kf+e+++g+   s  ++le ++g+ ++v+   +k  +++vl++GW  F +  ++keg f+vF+++g s f  +v vf
  TRIUR3_35130-P1  1 IPQKFVENFEGQ--ISEVIKLEAPDGNIFNVQA--TKDLNKIVLGSGWGVFISFYEVKEGYFLVFRYMGASHF--KVLVF 74
                     8*****999888..7779***************..**********************************9999..77666 PP
2B349.48.1e-161552341499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + +++p kf++++ g    sk ++le ++g+++++++   +  ++++l++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  TRIUR3_35130-P1 155 QEISIPEKFVNNFRGR--ISKVMKLEAPDGNVYNIQV--INDLNKIFLRSGWAAFASAYELKEHDLLVFRYIGDSHF--KVLIFDP 234
                      5699******888766..7899***************..999999****************************9999..9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.392177IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14179IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-13175IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-10174IPR003340B3 DNA binding domain
CDDcd100173.33E-14175No hitNo description
SuperFamilySSF1019361.22E-20138237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-19139237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787142235IPR003340B3 DNA binding domain
SMARTSM010192.4E-7145235IPR003340B3 DNA binding domain
PfamPF023621.0E-13155233IPR003340B3 DNA binding domain
CDDcd100171.10E-17157233No hitNo description
Gene3DG3DSA:2.40.330.102.9E-14342436IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-17343440IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.264346442IPR003340B3 DNA binding domain
CDDcd100171.73E-8346439No hitNo description
SMARTSM010190.0044348442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
IPQKFVENFE GQISEVIKLE APDGNIFNVQ ATKDLNKIVL GSGWGVFISF YEVKEGYFLV  60
FRYMGASHFK VLVFDFASCC EKEVLHVLMN YGPSAQEKDI RLDQSPLSER RCQNGGSRNG  120
GSHRRCEHCD VHFYWHHMDD RQKHFLRLMF GDFRQEISIP EKFVNNFRGR ISKVMKLEAP  180
DGNVYNIQVI NDLNKIFLRS GWAAFASAYE LKEHDLLVFR YIGDSHFKVL IFDPSGCEKE  240
LFHIVMNHTP NLQETGISHD QPFLKETRRH CESRDYNSRK TKKMTPLDSP SPRSAEGVKS  300
PEDTLNSGGL RETTKPRYVL ATRCNLTTAQ KAEVDALVRK VRPAIPFYIT AMSKTSISGS  360
LVICKDYAAK YLPDGDQFIT LCHPHKSNIW IDNLKVITDG SRMLSVGWSC FVLHNELRES  420
DICLFEVWKS DGDVTMVVHS LEGGHHLQGK EPESQKKRRY PVKAEATEDE ESDKEHAESN  480
YYYSRHANGL TSDEQEDIFR SALIQQGNPV YVAVLGKNHV KKGNNLLTIP RKFAAKHLAA  540
RSHDILLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLT1NW750.0T1NW75_TRIUA; Uncharacterized protein
STRINGTRIUR3_35130-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-20B3 family protein