PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_35037-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 345aa MW: 37653.6 Da PI: 7.6622 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 2.9e-32 | 194 | 251 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ TRIUR3_35037-P1 194 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 251 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-34 | 180 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-29 | 186 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 188 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 193 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 194 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSSGGGGGGD QGRHGLYHQH GHGQLTRYDG AGGYELSNDD MESFFFSQPE GVGGGVRADE 60 IAPYSSITSY LQGFLDPTGL ARHLDVPAKH ELSVDVRSHD QDSQGTGSAA GESAALLTPN 120 SSVSFSSGGG DGEGKSRRSK KGRAQEPDDQ EDGKDHEDGE SSKTANNKPK KKAEKRPRLP 180 RVSFLTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TPKCGVKKRV ERSYQDPSTV 240 ITTYEGQHTH HSPASLRGSA AHLFMPPGLH GLPPPHLIPP GVFHPELMSM MRMPYPSPNM 300 HLLSVPPPPH HHPTSHPMAG TLQQYHFTDY ALLQDLSTST MPNNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-29 | 186 | 254 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-29 | 186 | 254 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00168 | DAP | Transfer from AT1G29860 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192765.1 | 0.0 | probable WRKY transcription factor 71 | ||||
TrEMBL | A0A3B6EIG5 | 0.0 | A0A3B6EIG5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NIM7 | 0.0 | A0A446NIM7_TRITD; Uncharacterized protein | ||||
TrEMBL | M8AKQ3 | 0.0 | M8AKQ3_TRIUA; Putative WRKY transcription factor 71 | ||||
STRING | Traes_3AL_140B829CB.2 | 0.0 | (Triticum aestivum) | ||||
STRING | TRIUR3_35037-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 2e-47 | WRKY DNA-binding protein 28 |