PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_34958-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 299aa MW: 32843.4 Da PI: 6.5109 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.7 | 1.1e-11 | 1 | 28 | 16 | 43 |
HHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifsst 43 Rr+g+lKKA+EL ++C+a+++v+++++ TRIUR3_34958-P1 1 RREGLLKKAKELAIMCNAKACVLVYGKG 28 9************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.199 | 1 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-8 | 1 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
RREGLLKKAK ELAIMCNAKA CVLVYGKGEA VPQVFPSPAE AVPVLKHYKN MPEGNFKNTV 60 NHASFLNQHF DKLQAKGYKL QGVCEDNETR ILLHKAMLSN LSNLDGLNIE DLTNVGRKLE 120 VILQSIGESI IKISGQPPIF QPQEPYVTNT KDMGSPAMYH APPPAPYVTN YMHMESPSTY 180 QAPPLAPYIT HNMDMGSSMM YSTASPAPYV TSGMDMGPPT MFKAPTQQQE DSLDMMRYGG 240 DLKALVYSGY NSSGRNDTST STDFPSGDIH LKRSFEVGFS WQFGGADPEA SSSSPFLPM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184638.1 | 0.0 | uncharacterized protein LOC109770348 | ||||
TrEMBL | T1NVR5 | 0.0 | T1NVR5_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_34958-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28700.1 | 2e-14 | AGAMOUS-like 46 |