PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT2G28700.1

Common Name

AGL46

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 329aa MW: 38020.1 Da PI: 5.6202

Description

AGAMOUS-like 46

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G28700.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.9	7.4e-10	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+ +f +Rr+g lKK + L vLCd++++ +++ + AT2G28700.1 11 IFNDRMRKRSFKQRREGFLKKLNDLKVLCDVNACAVVYNP 50 669999*****************************99965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-12	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-19	1	83	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.549	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.34E-28	2	85	No hit	No description
Pfam	PF00319	1.6E-10	11	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009089	anatomy	endosperm

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MARKKLNLTY IFNDRMRKRS FKQRREGFLK KLNDLKVLCD VNACAVVYNP FNSNPDVWPS 60 KSEVNNIIKK FEMLPETQKK VKSVNHEEFL NLYISKVEKQ SKKLIVENKE TCLKEVMFKC 120 LGGNMGDFVM NDNDRLDLCK FIDHYLRNLY HHKNVTLNNP NFEIGESSSL MDMAPTATTG 180 NMATTVVDEG MTPLLIAEGS SSSFLNSPLF NSPQLTNELQ LIVSQNHRLE NSLASNLFFS 240 EGQDICIPDM NQSIIPSNQG AEHVDFLESN FLPNNNQEVY IPVMDQDEVY NPNQNHYENQ 300 QGFIDEMMKY AEKTSFPWMV ENHCYNHNQ

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	263444_at	0.0
Expression Atlas	AT2G28700	-
AtGenExpress	AT2G28700	-
ATTED-II	AT2G28700	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G28700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G28700

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY291206	0.0	AY291206.2 Arabidopsis thaliana hypothetical protein At2g28700 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_180438.2	0.0	AGAMOUS-like 46
TrEMBL	A0A178VYD3	0.0	A0A178VYD3_ARATH; AGL46
TrEMBL	F4IIT6	0.0	F4IIT6_ARATH; AGAMOUS-like 46
STRING	AT2G28700.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415
Representative plant	OGRP114	13	173

Link Out ? help Back to Top
Phytozome	AT2G28700.1
Entrez Gene	817419
iHOP	AT2G28700
wikigenes	AT2G28700

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Willems G, et al. The genetic basis of zinc tolerance in the metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): an analysis of quantitative trait loci. Genetics, 2007. 176(1): p. 659-74 [PMID:17409091] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316]