PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34926-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 375aa    MW: 41933.6 Da    PI: 10.0294
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34926-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.41.5e-13951531977
            NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77 
                      +++P arikki++adedv +i+  +Pvl+s+a elf+ +l   s+  + ++  +tl+  
  TRIUR3_34926-P1  95 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDHSYKITLQSGAKTLNSF 153
                      689*******************************************9999999999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-2390155IPR009072Histone-fold
SuperFamilySSF471131.33E-1490157IPR009072Histone-fold
PfamPF008084.3E-1696157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVALVAGAAM EAPPTTARKA GSAGLQWETR QISFWHESVC PVPWWCKLVE RQQNKKSNRQ  60
RRTRKENTQK IDHDCRHRAR RGVGGATKMR KKLGTRFPAA RIKKIMQADE DVGKIALAVP  120
VLVSRALELF LQDLIDHSYK ITLQSGAKTL NSFHLLQRGT RISEADEHKK IIGKLLSRLK  180
MYQQMLRKQC VKRYSSFDFL TEIVNKVPDL GGGESCGDER GLPRRRKFSN GSDPENEEPR  240
SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEIGYVQFE DESSMFAEQS EPLPGDEIVP  300
ETNHGNESIP QSSHPLVEAP SAVTPAVISK VEEASTNHQP DWPMPDAIGG IGVGPSSFGH  360
LTVQVDEVED YDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-1990157572Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15061RQQNKKSNRQRR
2222226PRRRK
3255264RGRGRGRGRG
4255265RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093050.0BT009305.1 Triticum aestivum clone wlm1.pk0016.f3:fis, full insert mRNA sequence.
GenBankKM0787300.0KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156751.11e-156dr1-associated corepressor-like
TrEMBLM8AUA20.0M8AUA2_TRIUA; Dr1-associated corepressor-like protein
STRINGTRIUR3_34926-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.14e-42nuclear factor Y, subunit C11