PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_34272-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 35392.8 Da PI: 5.4867 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.1 | 9.6e-42 | 5 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF Pt+eel+++yL++k++g++ ++e+vi+ vd+y+v+P +L + + + e + w++F+ r++++a+g r++r+t sgyWka TRIUR3_34272-P1 5 LPPGYRFYPTEEELICFYLRNKLDGSRGDIERVIPVVDVYSVDPLQLSEiherlR--GggggEGEPWFYFCARQEREARGGRPSRTTPSGYWKA 96 79****************************99***************85456541..244446679**************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++ +gl+kt+vfy+grap+g+kt+W m+eyr+ TRIUR3_34272-P1 97 AGTPGGVYSADRRPIGLRKTMVFYRGRAPSGTKTKWKMNEYRA 139 *****************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-46 | 3 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.685 | 5 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-23 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MADGLPPGYR FYPTEEELIC FYLRNKLDGS RGDIERVIPV VDVYSVDPLQ LSEIHERLRG 60 GGGGEGEPWF YFCARQEREA RGGRPSRTTP SGYWKAAGTP GGVYSADRRP IGLRKTMVFY 120 RGRAPSGTKT KWKMNEYRAF QHEHNDDAAG APTATGGPHA AAPPNLPPQL RSEFSLCRLY 180 TKSGTLRQFD RRPVAAAARG DIPGPSTAAT ASPDDGDGSG GSMQPLEEDL MEGAGVGGDV 240 PVNYEGICGD FVNLKIKCQL GLSEVLIVLP SEWLPVLDML VGARDLADRG NGSIGEGSGA 300 KWSELGFLPN VGFYGVGAVN LEALGAIRST |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 4 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 4 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 4 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 4 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-26 | 4 | 188 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-26 | 4 | 188 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 4 | 188 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-153 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158560.1 | 1e-149 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-63 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | M7ZHC8 | 0.0 | M7ZHC8_TRIUA; NAC domain-containing protein 90 | ||||
STRING | TRIUR3_34272-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-62 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|