PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32260-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 555aa    MW: 62537.3 Da    PI: 9.9272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32260-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.8e-14331101396
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ +++pkkf++++ggk   s+t+ le+++g+ + +++  +k  g +v+ +GW+ F ++ ++ e+D+++F+++++s+fe  v v
  TRIUR3_32260-P1  33 RHGMIIPKKFIDNFGGK--ISRTIELESSNGNMYVFEV--SKLMGNTVIHRGWQAFIDELHIIENDSLLFRHIEKSRFE--VLV 110
                      567********999998..888****************..9*******************************9989995..444 PP
2B355.31.2e-17234335199
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                      f+ v++ps+v ++ + lv+pk +a eh     +s+t+tl+   ++++W  ++ + + + g+++ + GW eFv + ++++gD+++F+++ g+ ++
  TRIUR3_32260-P1 234 FVAVMKPSYVKSQtSALVIPKGYAVEHLP--SKSQTVTLQRpGKSKKWHPRFYIrKDTHGSILCGPGWLEFVCDTRVQVGDICIFERMkGTgRT 325
                      788999****999888***********53..46779*****5566*******553445555*************************77588899 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      f+l+v+++rk
  TRIUR3_32260-P1 326 FSLRVHLLRK 335
                      9999999997 PP
3B352.59e-17459551799
                      .-HHHHT.T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
               B3   7 psdvlks.grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      +s+v++s   + + +++a+e+       +++t+tl + e ++ Wevk+ + +++++ vl++GW +F+++++Lk+ D+++F+l  + ++ +++v 
  TRIUR3_32260-P1 459 KSSVGNSlYTVNICREYAAEYlaA----GEQTVTLVTaEMSKAWEVKV-HPRNGRAKVLRRGWHKFARDKHLKVQDICLFQLLTDqRKLTMMVD 547
                      55555554678899****999532....4457888885778*******.566666789***********************99777******** PP

                      EE-S CS
               B3  96 vfrk 99 
                      ++r+
  TRIUR3_32260-P1 548 IIRH 551
                      9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.2E-620114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-1620115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1820118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.54621114IPR003340B3 DNA binding domain
CDDcd100172.40E-1322112No hitNo description
PfamPF023628.7E-1233110IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-20230326IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-22231336IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-19232334No hitNo description
PfamPF023621.2E-15234335IPR003340B3 DNA binding domain
SMARTSM010196.8E-12234336IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547235336IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-17446551IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-20446550IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-14451550No hitNo description
SMARTSM010190.0019453552IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448454552IPR003340B3 DNA binding domain
PfamPF023625.8E-15456551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
SQMEKLCDCC KRYADHLDEK MKCFRRHMGA DFRHGMIIPK KFIDNFGGKI SRTIELESSN  60
GNMYVFEVSK LMGNTVIHRG WQAFIDELHI IENDSLLFRH IEKSRFEVLV LDSDDCEKVF  120
FCPGINLNSV NISNGSRDNA TRSSGSKRFA TCGRGNSSHP RKAAKTALNY SSPENSEEGT  180
EDIPSEHESY FELDDGHTPS RQDYVLARGR TLSRVQDEKV TTLIQDVGAE IPVFVAVMKP  240
SYVKSQTSAL VIPKGYAVEH LPSKSQTVTL QRPGKSKKWH PRFYIRKDTH GSILCGPGWL  300
EFVCDTRVQV GDICIFERMK GTGRTFSLRV HLLRKSMLHS GGSGTGPKRV SSTHGKTRVN  360
SATPKRACIT DGRTRAKATS TTCVRKEPGD GGNAPYSVRS HGHEARQGPV ESDKSRGPWK  420
RPYVISSTAC LTREQEMNVD KRGRALQSKV PIYVSIMNKS SVGNSLYTVN ICREYAAEYL  480
AAGEQTVTLV TAEMSKAWEV KVHPRNGRAK VLRRGWHKFA RDKHLKVQDI CLFQLLTDQR  540
KLTMMVDIIR HHENQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189914.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLT1NND60.0T1NND6_TRIUA; Uncharacterized protein
STRINGTRIUR3_32260-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-15B3 family protein