PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31431-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 538aa    MW: 57687.8 Da    PI: 6.8246
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31431-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06109130526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f ++  C++Gd C +aHg
  TRIUR3_31431-P1 109 PCPEFKKGAGCRRGDMCEYAHG 130
                      8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.8E-4104131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4107131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258109132IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925140164IPR000571Zinc finger, CCCH-type
SMARTSM0035687140163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGEASEYDGV DVAAVSARLL ELVADDDVTA LVDLLAAHPL LRVREWPPDP SLPDIKNGAY  60
ASDDFRMYSF KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFKKGAGCR  120
RGDMCEYAHG VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTPEELRPLY VSTGSAVPSP  180
RGAMEMAAMG MGLSSPGSSF TPPLSPSGGG SGMAWPQPNL PALCLPGSAG NLHLSRLRTS  240
LSARAMAVDE LLASGDYDNH LGSPASVRSA RGKALVPSNL DELFSAEMAA SHSPRYGDQG  300
GAAFSPTHKA AFLNQFQQHQ SLLSPRAAAT PEPVSPMSSR LLAALAQREK MQQQTLRSMS  360
SRDLGSSAPL LVGSPVVGSS WSKWGLPSGT PDWGADNDEL GRLKRSSSFD LRSGANTDEP  420
DLSWVNTLVK EPTPEKSSTN GTMATESIGI LGRSASHHGS IAGDDSAILG GSANHREGID  480
GEEDAATGVI GGWLEQLQLD EMGIKPFRAG KKNPRSAGAL TKIVLGIWTD PFSFSWRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649400.0AK364940.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177942.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLM7YT770.0M7YT77_TRIUA; Zinc finger CCCH domain-containing protein 67
STRINGTRIUR3_31431-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-141CCCH-type zinc finger protein with ARM repeat domain