PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_29805-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25067.8 Da PI: 5.0056 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2.1e-16 | 48 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + g+Wv+e+r+p g ++ r++lg+f +a++Aa+a++ a+++l g TRIUR3_29805-P1 48 PVYRGVRRRGREGQWVCELRVPA--GsRSySRIWLGTFASAQMAARAHDSAALALSG 102 68*******************84..55456***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.9E-13 | 48 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.705 | 49 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-18 | 49 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-25 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-16 | 49 | 112 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.88E-16 | 62 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MDTIAAWPQF DGQEYRTVWP EEQEYRTVGS EPPKRRAGRN KLQETRHPVY RGVRRRGREG 60 QWVCELRVPA GSRSYSRIWL GTFASAQMAA RAHDSAALAL SGRDACLNFA DSAWRMMPVH 120 AAGSFKLAAA QEIKDAVAVA LREFQEQQRP ADESTAPSST AEESALSIIP SDLSGLDNEH 180 WIGGMEAGSY YASLAQGMLM EPPADGAWRE DREHDDGFDT SLWSY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00453 | DAP | Transfer from AT4G25480 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF028769 | 0.0 | EF028769.1 Triticum aestivum CBFIVa-A2 mRNA, complete cds. | |||
GenBank | JF758488 | 0.0 | JF758488.1 Triticum aestivum clone 190H5 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167747.1 | 1e-151 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q3T5N4 | 5e-48 | DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B | ||||
Swissprot | Q8GUW4 | 5e-48 | DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B | ||||
TrEMBL | M8AXJ7 | 1e-164 | M8AXJ7_TRIUA; Dehydration-responsive element-binding protein 1B | ||||
STRING | TRIUR3_29805-P1 | 1e-165 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-27 | C-repeat/DRE binding factor 2 |