PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29805-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 225aa    MW: 25067.8 Da    PI: 5.0056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29805-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82.1e-1648102155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++ + g+Wv+e+r+p   g ++  r++lg+f +a++Aa+a++ a+++l g
  TRIUR3_29805-P1  48 PVYRGVRRRGREGQWVCELRVPA--GsRSySRIWLGTFASAQMAARAHDSAALALSG 102
                      68*******************84..55456***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-1348102IPR001471AP2/ERF domain
PROSITE profilePS5103220.70549110IPR001471AP2/ERF domain
SMARTSM003801.9E-1849116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-2549112IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1649112IPR016177DNA-binding domain
CDDcd000184.88E-1662112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDTIAAWPQF DGQEYRTVWP EEQEYRTVGS EPPKRRAGRN KLQETRHPVY RGVRRRGREG  60
QWVCELRVPA GSRSYSRIWL GTFASAQMAA RAHDSAALAL SGRDACLNFA DSAWRMMPVH  120
AAGSFKLAAA QEIKDAVAVA LREFQEQQRP ADESTAPSST AEESALSIIP SDLSGLDNEH  180
WIGGMEAGSY YASLAQGMLM EPPADGAWRE DREHDDGFDT SLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00453DAPTransfer from AT4G25480Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0287690.0EF028769.1 Triticum aestivum CBFIVa-A2 mRNA, complete cds.
GenBankJF7584880.0JF758488.1 Triticum aestivum clone 190H5 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167747.11e-151dehydration-responsive element-binding protein 1B-like
SwissprotQ3T5N45e-48DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B
SwissprotQ8GUW45e-48DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBLM8AXJ71e-164M8AXJ7_TRIUA; Dehydration-responsive element-binding protein 1B
STRINGTRIUR3_29805-P11e-165(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-27C-repeat/DRE binding factor 2