PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29383-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 220aa MW: 24127.4 Da PI: 8.8922 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 87.6 | 1.4e-27 | 1 | 51 | 17 | 67 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddl 67 mk+vlP nak+sk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd TRIUR3_29383-P1 1 MKQVLPPNAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDG 51 9************************************************94 PP | |||||||
2 | NF-YB | 31.2 | 5.2e-10 | 94 | 124 | 4 | 34 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaket 34 +++ lPianv+rimk vlP +ak+sk+ake TRIUR3_29383-P1 94 KEAPLPIANVGRIMKDVLPPEAKVSKHAKED 124 6788*************************96 PP | |||||||
3 | NF-YB | 94.5 | 9.6e-30 | 125 | 185 | 20 | 80 |
NF-YB 20 vlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 vlP +ak+sk+ake++qec++efi+fvt+eas++c+re+rkt+ngdd+++a++tlG+++y+ TRIUR3_29383-P1 125 VLPPEAKVSKHAKEVIQECATEFIGFVTGEASERCRRERRKTVNGDDICHAMTTLGLDNYA 185 89**********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.24E-17 | 1 | 50 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.1E-24 | 1 | 50 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-18 | 1 | 50 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-9 | 19 | 37 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 22 | 38 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
Gene3D | G3DSA:1.10.20.10 | 6.7E-7 | 94 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-24 | 96 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-5 | 98 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-25 | 125 | 185 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-15 | 127 | 176 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-9 | 159 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKQVLPPNAK VSKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD GSCWRYSKGI 60 SSRVPRKAFP GFLCRFFRGD GAAKPPPPSD PRGKEAPLPI ANVGRIMKDV LPPEAKVSKH 120 AKEDVLPPEA KVSKHAKEVI QECATEFIGF VTGEASERCR RERRKTVNGD DICHAMTTLG 180 LDNYAGSRSP APPPPGDGMI QIDVWGELSN SRGNEKHGRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-26 | 1 | 185 | 8 | 80 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-26 | 1 | 185 | 8 | 80 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM078743 | 1e-102 | KM078743.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196190.1 | 7e-67 | transcriptional activator hap3-like | ||||
Swissprot | O04027 | 1e-29 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | M8ASW7 | 1e-161 | M8ASW7_TRIUA; Nuclear transcription factor Y subunit B-4 | ||||
STRING | TRIUR3_29383-P1 | 1e-162 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 7e-32 | nuclear factor Y, subunit B4 |
Publications ? help Back to Top | |||
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