PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_29141-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 27918.6 Da PI: 6.512 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.6e-12 | 100 | 146 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h ++Er RRd++N +f Lr +P+ +++Ka+ L Av YI +L TRIUR3_29141-P1 100 VSHVQAERLRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYIAEL 146 5899***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-15 | 89 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.856 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.03E-9 | 100 | 151 | No hit | No description |
Pfam | PF00010 | 1.4E-9 | 100 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 101 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-10 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDDLLSPCSS FLPPSPSSHF STVGQQVLEF VSREVPEQWL FDDGTMCQNA DRELSPTGRT 60 LLRSAELSEL PPSLPATLQC QTKRRGRKPG PRSDGRHSAV SHVQAERLRR DKLNRRFCDL 120 RAAVPNVSRM DKASLLADAV AYIAELRSRV ARLEDEANKE LEQSSVAASK FLQVDEAVDV 180 RMVGSDAAAV HVTTAASHAP ARLMGALRSL ELQVQHACVS RVQGVTLQDV VVDVPPSMQD 240 ADGLRSALLQ TLQDSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-21 | 95 | 156 | 2 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195652.1 | 1e-127 | transcription factor MYC2-like | ||||
TrEMBL | M7ZQR5 | 0.0 | M7ZQR5_TRIUA; Transcription factor MYC2 | ||||
STRING | TRIUR3_29141-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 5e-32 | bHLH family protein |