PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_28928-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 265aa MW: 29056.6 Da PI: 10.2699

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_28928-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.7	8.1e-33	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF TRIUR3_28928-P1 109 DEPIFVNPKQYNGILRRRQLRAKLEAQNKL-TKNRKPYLHESRHLHAMKRARGSGGRF 165 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-37	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.727	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.8E-29	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-22	111	133	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-22	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MNRQHCDVVL DLQLRPILSS GDSFGKSVDD HMRSTLTFGD KHSVYAGQNT DYGHPMACIS 60 YPFNDSGSGV WAAYGSRAML YMEQFQPLMA GGGASATARV PLPVELAADE PIFVNPKQYN 120 GILRRRQLRA KLEAQNKLTK NRKPYLHESR HLHAMKRARG SGGRFLNSKQ LKQQQQSGSA 180 CTKAIADGPN SVGSTHLRLG SGAAGDRTNS VSKAMSSQEN SKRVAAPAPA FTMIQAARKD 240 DDFFHHHAHH LSFSGHFGQS SDRYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	109	170	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009542	0.0	BT009542.1 Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence.
GenBank	KM078746	0.0	KM078746.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A1) mRNA, complete cds.
GenBank	KM983028	0.0	KM983028.1 Thinopyrum ponticum x Triticum aestivum NF-YA10-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156071.1	1e-148	nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBL	M8AMG4	0.0	M8AMG4_TRIUA; Nuclear transcription factor Y subunit A-5
STRING	TRIUR3_28928-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13276	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	2e-33	nuclear factor Y, subunit A5