PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28399-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 610aa    MW: 67426.5 Da    PI: 5.2878
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28399-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-10278347176
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k +++s+v    +l lp +f+++h  k  +++ ++lede+g  ++ k+   + +++  l++GW++F+  +g+k+
  TRIUR3_28399-P1 278 FVKYMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHGIKV 347
                      8999*******************999533..5679***************..888877..9***********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-11272347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-15273347IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-16276347No hitNo description
SMARTSM010192.5E-5278361IPR003340B3 DNA binding domain
PfamPF023627.2E-9278347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MARENGKCTF QMCTGHFSNR AWVKTNQPTY TASFNHYSRT KKRGRPAGGG SPSVSKSERD  60
KMVMEQKMAL VHRRLALLDS EGDKEADVVP TATMVDVVFH ISHFISFCFL KLDPGSLTIA  120
ELPLIIYNGP WGENDDRLAI VVDQQPVVVN GDDTDDEDEY VPLRIVRPRS VDSEQKRLLD  180
VSQTHNAQDT GTAKKKRGRP VNAKIDMEQK LNMSTPGLGL VESGGSNSSK SDVDDDLVPM  240
VAAVNCQKTC ASVQGNFGSA MERAEEVLVK LPAEHPSFVK YMLHSHVVHG FWLGLPSDFC  300
NKHLPKKDTA IVLEDEDGHN YDAKYLGAKQ GLSAGWRGFA INHGIKVYIL RANNFTTTDG  360
ALGLLCLEGG KEKIPKEESS NDVKSEAGKE NIPKEESSND VKSKAGKEKI LKEESSNDVK  420
SEAVKEKIPK EESSIDVKSE EKPKVAQSDS SNLASESITD GIKFSDTVID FDNVKDFSSF  480
SIVVDGLVID CEFPDHLRET YYELCCAQKS FLHKELLKGL NLTLVVGAIM ETIDIAEGIR  540
ACKARAPSCR DFVVWKKNLQ ALKLLGMNAV ESRISSVKDT LEEIDMEMEE LESSVKIVDE  600
MMQLLATAPW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189684.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLT1NCY30.0T1NCY3_TRIUA; Uncharacterized protein
STRINGTRIUR3_28399-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-27B3 family protein