PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_27706-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 878aa MW: 97859.6 Da PI: 6.6349

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27706-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.7e-18	98	144	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++++ vk++G+ W+tIa+ + gR +kqc++rw+++l TRIUR3_27706-P1 98 KGPWSKEEDDIIIQMVKKYGPTKWSTIAQALS-GRIGKQCRERWHNHL 144 79****************************.***********97 PP
2	Myb_DNA-binding	51.5	2.4e-16	150	192	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT++E+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ TRIUR3_27706-P1 150 KDAWTQQEEIRLIQAHHIYGNK-WAELSKFLP-GRTDNAIKNHWH 192 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-4	86	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	31.218	93	148	IPR017930	Myb domain
SuperFamily	SSF46689	6.11E-31	95	191	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-17	97	146	IPR001005	SANT/Myb domain
CDD	cd00167	5.98E-15	100	144	No hit	No description
Pfam	PF13921	1.6E-18	101	161	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-25	106	151	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-15	149	197	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.835	149	199	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-21	152	198	IPR009057	Homeodomain-like
CDD	cd00167	1.46E-11	152	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MPPPSVWPEP DEVFTPATTL CLRPGYDMMG ERRPYHHRRA SKARPHAALA AMKARPSAPE 60 LRAPPTSPQL PPPRPPPCIQ TLRRPLRWQK VLNPELVKGP WSKEEDDIII QMVKKYGPTK 120 WSTIAQALSG RIGKQCRERW HNHLNPGINK DAWTQQEEIR LIQAHHIYGN KWAELSKFLP 180 GRTDNAIKNH WHSSVKKKYE SYRAEGLLAQ FQGLPAALYP RGSLNVDSSS AMTQQNSDGS 240 GLNVNQEVQD SSEFSQSALA NISSSQVEQV DEPVGCHGQI HSSDGAHDSY SSCQEACDTK 300 ANDAASTSPE TRHQLSISEN DPDMHWQQDL SVADFDLQSE LWQDISYQSL TAPDSISADS 360 FFSPNYQHSA CSSEVANNFE EPLYPLHTYS SSRTGTVHHQ SSATSVPPSF ICSGRASQIV 420 SSELPIVPES KEQQMTSVEE SLPIVPESKE QQLTSVEESQ PLESTTMGRE ASPNHGKSVV 480 GQKQHSESLC YEPPCFPSLE VPFVSCELIS SSDLPEYSPL GIRQFMRPSM SFSTPLRLWS 540 SPTRDRSPDD VLKSAAKSSV CTPSIMKKRQ REPPSPIPDV RLAKKMGTEK DCGSSAMPST 600 RTERSCRDAT RDDSLDLIPE NLKDIIYQGK TEDNANINTL EKRERCSTTE RDTAYNLVSV 660 LILLILPFIH YHNARVLPIN HGKVSAGILT DRNGPNPERR KLNTPTKSFS KDIISSRSKP 720 TELLVEKYSV YINADYEYVN ILADTPGIKR GLESPSAWKS PLFTNFQDGF FMSPTGTTFD 780 ALGLVKQINE QNAPALEEAH ELLESGSLCN KESSDKENIK HIVIKKEHAT TNQISNVMSE 840 ARILDFNECT TPVKKKEDNR CSTLGRSPTS SYVLKNVR

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MPPPSVWPEP DEVFTPATTL CLRPGYDMMG ERRPYHHRRA SKARPHAALA AMKARPSAPE  60
LRAPPTSPQL PPPRPPPCIQ TLRRPLRWQK VLNPELVKGP WSKEEDDIII QMVKKYGPTK  120
WSTIAQALSG RIGKQCRERW HNHLNPGINK DAWTQQEEIR LIQAHHIYGN KWAELSKFLP  180
GRTDNAIKNH WHSSVKKKYE SYRAEGLLAQ FQGLPAALYP RGSLNVDSSS AMTQQNSDGS  240
GLNVNQEVQD SSEFSQSALA NISSSQVEQV DEPVGCHGQI HSSDGAHDSY SSCQEACDTK  300
ANDAASTSPE TRHQLSISEN DPDMHWQQDL SVADFDLQSE LWQDISYQSL TAPDSISADS  360
FFSPNYQHSA CSSEVANNFE EPLYPLHTYS SSRTGTVHHQ SSATSVPPSF ICSGRASQIV  420
SSELPIVPES KEQQMTSVEE SLPIVPESKE QQLTSVEESQ PLESTTMGRE ASPNHGKSVV  480
GQKQHSESLC YEPPCFPSLE VPFVSCELIS SSDLPEYSPL GIRQFMRPSM SFSTPLRLWS  540
SPTRDRSPDD VLKSAAKSSV CTPSIMKKRQ REPPSPIPDV RLAKKMGTEK DCGSSAMPST  600
RTERSCRDAT RDDSLDLIPE NLKDIIYQGK TEDNANINTL EKRERCSTTE RDTAYNLVSV  660
LILLILPFIH YHNARVLPIN HGKVSAGILT DRNGPNPERR KLNTPTKSFS KDIISSRSKP  720
TELLVEKYSV YINADYEYVN ILADTPGIKR GLESPSAWKS PLFTNFQDGF FMSPTGTTFD  780
ALGLVKQINE QNAPALEEAH ELLESGSLCN KESSDKENIK HIVIKKEHAT TNQISNVMSE  840
ARILDFNECT TPVKKKEDNR CSTLGRSPTS SYVLKNVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-50	87	198	47	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-50	87	198	47	158	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951920	0.0	JF951920.1 Triticum aestivum clone TaMYB35 R1R2R3-MYB protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174664.1	0.0	transcription factor MYB3R-1-like
TrEMBL	M8AP77	0.0	M8AP77_TRIUA; Myb-related protein 3R-1
STRING	TRIUR3_27706-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-70	myb domain protein 3r-4