PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_27479-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 273aa MW: 29625.7 Da PI: 7.899

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27479-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	27.6	9.2e-09	41	67	4	30
YABBY 4 fssseqvCyvqCnfCntilavsvPsts 30 seq+Cyv+C fC+t+l+v P ++ TRIUR3_27479-P1 41 EAPSEQLCYVHCHFCDTVLVVPDPRST 67 5689*****************998765 PP
2	YABBY	133.6	2.4e-41	170	233	108	170
YABBY 108 evprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl TRIUR3_27479-P1 170 PSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 233 567877769*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-6	43	66	IPR006780	YABBY protein
Pfam	PF04690	7.9E-39	171	233	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-8	171	226	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.0E-4	182	225	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0009933	Biological Process	meristem structural organization
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010093	Biological Process	specification of floral organ identity
GO:0010154	Biological Process	fruit development
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010159	Biological Process	specification of organ position
GO:0010450	Biological Process	inflorescence meristem growth
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSSSSSSGAS AAFTPVSQQQ QQMASESLSS ELQPPAPMQP EAPSEQLCYV HCHFCDTVLV 60 VPDPRSTSRP ATLPATPSWY FLACITMTCD PGWRASDCTY MWIYLVLDDL LRSNIVLLHV 120 DEISSANPSL QLLEQHGLGG LIAAAGGRKA AAPAPLPPPP VAGGKGGKEP SPRTNPVVNR 180 PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH FGLMPDHQGL 240 RKTSLLPQDH QRKDGHGLLK EGLYAANMGI APY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00620	PBM	Transfer from AT2G45190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	0.0	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178920.1	1e-117	protein YABBY 3-like
Swissprot	Q8L556	1e-70	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	T1NAF1	0.0	T1NAF1_TRIUA; Uncharacterized protein
STRING	TRIUR3_27479-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	8e-46	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]