PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27402-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 138aa MW: 15413.5 Da PI: 9.3128 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 121.8 | 1e-37 | 57 | 111 | 116 | 170 |
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl TRIUR3_27402-P1 57 GPAPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 111 3459*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-36 | 54 | 111 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-8 | 56 | 105 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-5 | 60 | 105 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MILNIPDAAA IVVLPKGECP WEQHAQHCDS PVWALHKPTF REPERADALT SPSRTTGPAP 60 EKRQRVPSAY NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHYPNIHFG LNPERDGGKR 120 LAVDDAAPAA KKIQGFCS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009106 | 1e-120 | BT009106.1 Triticum aestivum clone wkm2n.pk008.p10:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201583.1 | 3e-52 | protein YABBY 6-like | ||||
Swissprot | Q2QM17 | 2e-40 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | M8A0W7 | 5e-98 | M8A0W7_TRIUA; Protein YABBY 6 | ||||
STRING | TRIUR3_27402-P1 | 8e-99 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-32 | YABBY family protein |