PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27194-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 235aa    MW: 25513.1 Da    PI: 8.6185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27194-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.5e-082877554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                      +e+Er RR++++   ++L +l+Pk  +  +++  ++    L +A  YIk+L
  TRIUR3_27194-P1 28 RKEAERERRQHMKALCAKLTSLIPKeHF--SNPDtMTQLGSLDEAASYIKKL 77
                     579**********************876..5555699*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-101790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.552377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-132892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-62983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-52977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEMQAKAARG GKRSRTSGGT TATRVVERKE AERERRQHMK ALCAKLTSLI PKEHFSNPDT  60
MTQLGSLDEA ASYIKKLKER VDELQHRRNS AQAMAAARGA SGASTPTTTP TTSGGAGSPE  120
GEKHWEASAP VVEVCQHDDT SMDVVLVCST ERPIMLHQVI TILKEEGAEV VNANHSVAGH  180
KIFYTIHSRA FSSRIGIDVS SVSERLRALM PKNITNLLEC NLLSTGTGCL IICFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538220.0AK353822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003A14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190834.11e-114uncharacterized protein LOC109776583
TrEMBLM7XLW31e-174M7XLW3_TRIUA; Transcription factor bHLH36
STRINGTRIUR3_27194-P11e-174(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-12bHLH family protein