PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25232-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 536aa    MW: 60214.8 Da    PI: 7.132
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25232-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.32.2e-25182236156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      kpr+ Wt +LH++F+ea++q+ G ++A+Pk++lelm+v+ L++e+++SHLQkYRl+
  TRIUR3_25232-P1 182 KPRVTWTLQLHNKFLEAINQI-GLDRAVPKKVLELMNVDYLSRENIASHLQKYRLH 236
                      79*******************.********************************97 PP
2Response_reg78.62.1e-26111191109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +l+vdD+++ +++l+ +l++ +y + +++ d++ al++l   ++++Dl+++D++mp+mdG++ll+ ir e  +lp+i+++   +++ + + ++ 
  TRIUR3_25232-P1  11 ILVVDDDRVCLMVLEALLRRCKY-QPTTVMDAKTALRMLmaGKQQFDLVITDVRMPDMDGFKLLELIRLEM-DLPVIMLSVDCDKKVVMKGIEH 102
                      89*********************.999999999999999555555**********************9976.********************** PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga+df +Kp+   el +
  TRIUR3_25232-P1 103 GASDFMVKPVRTHELKN 119
                      **********9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.0E-1191528IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-347129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-398145No hitNo description
SMARTSM004488.7E-319121IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.44310125IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2311119IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.84E-2812124No hitNo description
Gene3DG3DSA:1.10.10.602.4E-26179240IPR009057Homeodomain-like
SuperFamilySSF466891.24E-18179239IPR009057Homeodomain-like
PROSITE profilePS5129410.099179238IPR017930Myb domain
TIGRFAMsTIGR015573.6E-24182236IPR006447Myb domain, plants
PfamPF002498.3E-6184234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
AEDKFPEGLR ILVVDDDRVC LMVLEALLRR CKYQPTTVMD AKTALRMLMA GKQQFDLVIT  60
DVRMPDMDGF KLLELIRLEM DLPVIMLSVD CDKKVVMKGI EHGASDFMVK PVRTHELKNI  120
WQHVQRWRNP KAISHINDHD SDVQRVQPAT AKKSKLPGNK RNVGDDSNKH NESTCVSTTH  180
RKPRVTWTLQ LHNKFLEAIN QIGLDRAVPK KVLELMNVDY LSRENIASHL QKYRLHLKKV  240
NSNHSGDAYE RWNSSYNMNN KGNFMHNHEH GRWSASSSDT SSWSTNNYDA TGHLAPAMNT  300
QSNFDMGSYL HDGRVPRYVG KQPSDARRFT GFGDPPVSLY NNIPNEIMLD EFPSFNYSNS  360
YADLMCGKLM ETSKGKTPSN RQSSFANTTV GGGRSLVASQ VNFPQTNQLE SYAMSLPLQN  420
EKAPFISNTT LVGGFTEQMA PFNMASNTSS VGTMLNGSSA LDASRTSTKD NHLVNSERTT  480
SMLYNLQTND FFSLTQLLDG GDGASILPMQ EGTLDQQPLN DQLNEINAFS VDDIFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23178241164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166370.10.0two-component response regulator ORR24-like
RefseqXP_020201549.10.0two-component response regulator ORR24-like
TrEMBLT1N4A20.0T1N4A2_TRIUA; Two-component response regulator
STRINGTRIUR3_25232-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-80response regulator 10