PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25116-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 141aa    MW: 15765.9 Da    PI: 10.1818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25116-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10255748
                     HHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48
                     eEd+ l+++v+  G g W++ ar  g            ++Rt+k+c++rw++yl
  TRIUR3_25116-P1  2 EEDLVLANYVAANGEGAWNSLARAAGeylpavhggasrLNRTGKSCRLRWLNYL 55
                     9****************************************************7 PP
2Myb_DNA-binding57.62.8e-1861104146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+v++ +++G++ W++Iar+++ gRt++++k++w++
  TRIUR3_25116-P1  61 RGNITPEEHLLIVELQARWGNR-WSKIARHLP-GRTDNEIKNFWRT 104
                      8999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.281155IPR017877Myb-like domain
SuperFamilySSF466895.84E-232102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-17262IPR009057Homeodomain-like
CDDcd001676.44E-5255No hitNo description
SMARTSM007170.059257IPR001005SANT/Myb domain
PfamPF002493.0E-9255IPR001005SANT/Myb domain
PROSITE profilePS5129424.63856110IPR017930Myb domain
SMARTSM007177.5E-1560108IPR001005SANT/Myb domain
PfamPF002491.1E-1561104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2363109IPR009057Homeodomain-like
CDDcd001674.84E-1265104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEEDLVLANY VAANGEGAWN SLARAAGEYL PAVHGGASRL NRTGKSCRLR WLNYLRPDVR  60
RGNITPEEHL LIVELQARWG NRWSKIARHL PGRTDNEIKN FWRTKIQKKR SGGATASDST  120
GPTVDQVLKV ENTILACTLE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-17210933127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036076e-58AP003607.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004A09.
GenBankAP0043676e-58AP004367.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0696E01.
GenBankAP0149576e-58AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593386e-58AY459338.1 Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene region.
GenBankCP0126096e-58CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176337.15e-66myb-related protein 305-like
SwissprotQ9SPG93e-54MYB24_ARATH; Transcription factor MYB24
TrEMBLA0A446JB673e-99A0A446JB67_TRITD; Uncharacterized protein
TrEMBLM8ATM73e-99M8ATM7_TRIUA; Transcription factor MYB21
STRINGTRIUR3_25116-P11e-100(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.11e-56myb domain protein 24
Publications ? help Back to Top
  1. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]