PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_24879-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 23507 Da PI: 4.4519 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.2 | 3e-27 | 10 | 108 | 1 | 83 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeek...ewyfFskrdkkyatgkrknr 76 +ppGfrFhPt+eelv +yL++kv++++++l ++i+evd+y++ePwdL+ + +e+ e+yfFs +d+ky++g+r+nr TRIUR3_24879-P1 10 VPPGFRFHPTEEELVGYYLARKVAAQTIDL-DIIQEVDLYRIEPWDLQDrcvggkggrgarqvaE---DEQsssELYFFSFKDRKYPSGTRTNR 99 69****************************.99**************945899999998874332...22234499****************** PP NAM 77 atksgy..W 83 at++g W TRIUR3_24879-P1 100 ATAAGEegW 108 *99885445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-25 | 5 | 104 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.487 | 10 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-12 | 11 | 108 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEHQQEESCV PPGFRFHPTE EELVGYYLAR KVAAQTIDLD IIQEVDLYRI EPWDLQDRCV 60 GGKGGRGARQ VAEDEQSSSE LYFFSFKDRK YPSGTRTNRA TAAGEEGWVV CRAFQKTTPN 120 QRPSYIFPAY AATPGLGSYY DARPWLHGRG DDLPYLQSAA GATGAGGLGF PSQDVNYSSE 180 DLLDSKQSLF GNIPQLIESP PATALLGCGD DAVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-24 | 5 | 122 | 10 | 110 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373002 | 1e-120 | AK373002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3017O09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184125.1 | 1e-100 | NAC domain-containing protein 30-like | ||||
TrEMBL | M7ZNI4 | 1e-157 | M7ZNI4_TRIUA; NAC domain-containing protein 7 | ||||
STRING | TRIUR3_24879-P1 | 1e-157 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66300.1 | 8e-39 | NAC domain containing protein 105 |