PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24820-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 103aa    MW: 11326 Da    PI: 8.7999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24820-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-1223784196
                     TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS
               B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96
                      +grsWe+++  ++++    l++GW++F+ +n L+ gD +vF+l+  + ++  ++v+v
  TRIUR3_24820-P1 23 WQGRSWEMRF--TGGRHIQRLEAGWRGFALDNALRLGDGCVFELVgCDgEGIVFRVQV 78
                     589*******..88888889***********************994444554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.478182IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-131081IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-121181IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-121180No hitNo description
PfamPF023622.8E-92269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
VQVVPRSMVP FLPSKPTPAT LTWQGRSWEM RFTGGRHIQR LEAGWRGFAL DNALRLGDGC  60
VFELVGCDGE GIVFRVQVLR AEIPASIRER AGGYTPSSAI VLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147560.18e-66B3 domain-containing protein Os04g0386900-like
SwissprotQ7XLP45e-46Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A3B6AZZ62e-67A0A3B6AZZ6_WHEAT; Uncharacterized protein
TrEMBLA0A446L2G02e-67A0A446L2G0_TRITD; Uncharacterized protein
TrEMBLT1N3589e-69T1N358_TRIUA; Uncharacterized protein
STRINGTRIUR3_24820-P11e-69(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]