PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24520-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 685aa    MW: 75667.3 Da    PI: 7.7216
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24520-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24109210199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  TRIUR3_24520-P1 109 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyNLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGE 199
                      99****************************9966654.569************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ l ++v+r+
  TRIUR3_24520-P1 200 DGVLQLGVRRA 210
                      89899999986 PP
2Auxin_resp105.46.5e-35235315182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha+++ks+F+++YnPr ++seF+v+++k+++++++++svGmRfkm++e+ed+serr +G+++g +++d  + ++SkW++L
  TRIUR3_24520-P1 235 VAHAVAMKSIFHIYYNPRLCESEFIVPYWKFMRSFSQPFSVGMRFKMKYENEDASERRSTGMITGSRESDL-KSHGSKWKCL 315
                      79******************************************************************776.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-42103219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-39105212IPR015300DNA-binding pseudobarrel domain
CDDcd100178.88E-23107209No hitNo description
PfamPF023621.1E-21109210IPR003340B3 DNA binding domain
SMARTSM010196.6E-22109211IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338109211IPR003340B3 DNA binding domain
PfamPF065071.7E-28235315IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MIGIDLNTVE DEEEGGPSAE PPRGTVRARA RGLLLVLYGV HNVFEVLTER ACSLQADPAT  60
DEVYAQVSLV VDNEEAKRRM RQGESEEACD GDGEDTGAAK RRARMPHMFC KTLTASDTST  120
HGGFSVPRRA AEDCFPPLDY NLQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA  180
FVNKKKLVSG DAVLFLRGED GVLQLGVRRA AQLKNVSPFP ALFNQDSSLR SLGNVAHAVA  240
MKSIFHIYYN PRLCESEFIV PYWKFMRSFS QPFSVGMRFK MKYENEDASE RRSTGMITGS  300
RESDLKSHGS KWKCLVVRWD DDVECRRPNR VSPWEIELAG SVSGSHLSSP HSKRLKPCLP  360
QVNPDMLLPS RLGCGSVSSD FAESARFHKV LQGQELLGSK AHDGTVNSAS EASQASEARN  420
FQYSDDRNCS INMCNIPGVP GLGARTPPEN HGFSYHCSGF GESQRFQKVL QGQEVFRPYE  480
GGTLSDAVIR GSSFCQPDGN YTSGATYKWL MSQGCDYRGP VTPAMPQASS PLSVLMFPQT  540
SSKIHGFEYV CRSLDKDDNI RHVTINATQD MGRTSHTLPL WPRLVSGKAV ASCAGTKKLP  600
SIGSAEHEPN DKDVHTNGCK IFGISLTQKV RVCDEVECSS ANCDFQLQPL KPQMSKSRGN  660
SCATVHEQRP AVGMVVDLSA VDTMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-865534583361Auxin response factor 1
4ldy_B2e-865534583361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761290.0AY376129.1 Triticum aestivum ETTIN-like auxin response factor (ETT2-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160561.10.0auxin response factor 2-like isoform X1
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLM7YPU30.0M7YPU3_TRIUA; Auxin response factor
STRINGTRIUR3_24520-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-126ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]